HHsearch alignment for GI: 254780263 and conserved domain: cd04146
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=98.46 E-value=3.8e-07 Score=63.39 Aligned_cols=149 Identities=18% Similarity=0.226 Sum_probs=85.1
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEE---EEEEECCCEEEEEEECCCCHHHHHHHH-H
Q ss_conf 999904689887899999987644420013126868698629206378---999821990899984787302467798-7
Q gi|254780263|r 15 LSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATA---HVSYETDKRFYSHIDCPGHADYVKNMI-T 90 (392)
Q Consensus 15 i~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~---~~~~~~~~~~i~iiD~PGH~~f~~~mi-~ 90 (392)
T Consensus 2 iv~vGd~~VGKTsli~rf~~~~f~-----~~y~---------~T~~~~~~~~~~v~~~~~~l~iwDtaG~e~~~~~~~~~ 67 (165)
T cd04146 2 IAVLGASGVGKSALVVRFLTKRFI-----GEYD---------PNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLER 67 (165)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCC-----CCCC---------CCCCCEEEEEEEECCEEEEEEEEECCCCCCCCHHHHHH
T ss_conf 999998997789999999749899-----8759---------95563057999999999999999289850122012554
Q ss_pred HHHCCCCEEEEECCCCCCCCCHH----HHHHHHHH--CCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEE
Q ss_conf 74002331452012344332106----77888863--1876023310023335612221101232100111014532210
Q gi|254780263|r 91 GATQADGAILVCAAEDGPKPQTR----EHILLARQ--IGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTP 164 (392)
Q Consensus 91 g~~~~D~ailvVda~~G~~~QT~----eh~~l~~~--lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~p 164 (392)
T Consensus 68 ~~~~a~~~ilvydit~~~Sf~~~~~~~~~i~~~~~~~~~~p-iilVGNK~DL~~~r~---Vs~ee~~~~a~~~----~~~ 139 (165)
T cd04146 68 SIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIP-VILVGNKADLLHYRQ---VSTEEGEKLASEL----GCL 139 (165)
T ss_pred HCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCE-EEEECCCCCCCCCCC---CCHHHHHHHHHHC----CCE
T ss_conf 30458789999865888999999999999999846699953-998445545210367---7999999999981----998
Q ss_pred CCCCEEEEEEECCCCCCCCCCCCCHHHHHH
Q ss_conf 233114676411444565212332034431
Q gi|254780263|r 165 IIRGSALCALQGTNKELGEDSIHALMKAVD 194 (392)
Q Consensus 165 ii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~ 194 (392)
T Consensus 140 f~E~SAk~~~~---------~V~~~F~~l~ 160 (165)
T cd04146 140 FFEVSAAEDYD---------GVHSVFHELC 160 (165)
T ss_pred EEEEECCCCCC---------CHHHHHHHHH
T ss_conf 99975208782---------6999999999