HHsearch alignment for GI: 254780263 and conserved domain: cd04152
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=98.96 E-value=2e-09 Score=77.51 Aligned_cols=144 Identities=17% Similarity=0.142 Sum_probs=79.4
Q ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEE--EE---ECCCEEEEEEECCCCHHHHH
Q ss_conf 27999990468988789999998764442001312686869862920637899--98---21990899984787302467
Q gi|254780263|r 12 SLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHV--SY---ETDKRFYSHIDCPGHADYVK 86 (392)
Q Consensus 12 ~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~--~~---~~~~~~i~iiD~PGH~~f~~ 86 (392)
T Consensus 3 ~~kIvilG~~~~GKTsil~r~~~~~--------f~~~-------~pTiG~~~~~~~~~~~~~~~v~l~iwDtaGqe~~r~ 67 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNE--------FVNT-------VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRP 67 (183)
T ss_pred EEEEEEECCCCCCHHHHHHHHHCCC--------CCCC-------CCCCCEEEEEEEEECCCCCEEEEEEEECCCCCCCCE
T ss_conf 7999999999998899999996498--------6776-------870355789999961678667999997898734510
Q ss_pred HHHHHHHCCCCEEEEECCCCC-CCCCHHHHHH-HH---HHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEE
Q ss_conf 798774002331452012344-3321067788-88---631876023310023335612221101232100111014532
Q gi|254780263|r 87 NMITGATQADGAILVCAAEDG-PKPQTREHIL-LA---RQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSD 161 (392)
Q Consensus 87 ~mi~g~~~~D~ailvVda~~G-~~~QT~eh~~-l~---~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~ 161 (392)
T Consensus 68 l~~~Y~r~a~g~i~V~D~td~~~~~~~~~~l~~~~~~~~~~~~p-iliv~NK~Dl~~~~~-~~ei~~~l~--l~~~~~~~ 143 (183)
T cd04152 68 LWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVP-VLVLANKQDLPNALS-VSEVEKLLA--LHELSAST 143 (183)
T ss_pred EHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCE-EEEEEECCCCCCCCC-HHHHHHHHH--HHHHHCCC
T ss_conf 08767467867899996776889999999999997321237962-999986677766878-899999971--99986669
Q ss_pred EEECCCCEEEEEE
Q ss_conf 2102331146764
Q gi|254780263|r 162 DTPIIRGSALCAL 174 (392)
Q Consensus 162 ~~pii~~sa~~g~ 174 (392)
T Consensus 144 ~~~i~~tSA~tG~ 156 (183)
T cd04152 144 PWHVQPACAIIGE 156 (183)
T ss_pred CCEEEEEECCCCC
T ss_conf 9899972799796