HHsearch alignment for GI: 254780263 and conserved domain: cd04156
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.03 E-value=8.2e-10 Score=79.92 Aligned_cols=139 Identities=14% Similarity=0.150 Sum_probs=82.6
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECC-CEEEEEEECCCCHHHHHHHHHHHH
Q ss_conf 9999046898878999999876444200131268686986292063789998219-908999847873024677987740
Q gi|254780263|r 15 LSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETD-KRFYSHIDCPGHADYVKNMITGAT 93 (392)
Q Consensus 15 i~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~-~~~i~iiD~PGH~~f~~~mi~g~~ 93 (392)
T Consensus 2 ivilG~~~~GKTsil~r~~~~---------~~~~------~~pTig~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~y~~ 66 (160)
T cd04156 2 VLLLGLDSAGKSTLLYKLKHA---------ELVT------TIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLE 66 (160)
T ss_pred EEEECCCCCCHHHHHHHHHCC---------CCCC------CCCCCCEEEEEEEECCEEEEEEEECCCCCCCCHHHHHHHC
T ss_conf 999999999999999999569---------8777------5776150389999899899999978986247415887745
Q ss_pred CCCCEEEEECCCCCC-CCCHHHHHH-HHHH---CCCCCEEEEECCCCCCCCHHHHHHCCC--CCCEEEEEEEEEEEEECC
Q ss_conf 023314520123443-321067788-8863---187602331002333561222110123--210011101453221023
Q gi|254780263|r 94 QADGAILVCAAEDGP-KPQTREHIL-LARQ---IGISSIVVYMNKVDAVDDDELLDISEY--EIRDLLKEHKYSDDTPII 166 (392)
Q Consensus 94 ~~D~ailvVda~~G~-~~QT~eh~~-l~~~---lgi~~iIv~iNKmD~v~~~~~~~~i~~--~i~~~l~~~~~~~~~pii 166 (392)
T Consensus 67 ~a~~iI~V~D~td~~~~~~~~~~~~~~l~~~~~~~~p-ili~~NK~Dl~~~~~-~~ei~~~l~~~~~~~~----~~~~i~ 140 (160)
T cd04156 67 NTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVP-VVLLANKQDLPGALT-AEEITRRFKLKKYCSD----RDWYVQ 140 (160)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCE-EEEEEECCCCCCCCC-HHHHHHHHHHHHHHHC----CCCEEE
T ss_conf 6778999985686788787999999998663537874-999998633656679-9999999869999853----999999
Q ss_pred CCEEEEEE
Q ss_conf 31146764
Q gi|254780263|r 167 RGSALCAL 174 (392)
Q Consensus 167 ~~sa~~g~ 174 (392)
T Consensus 141 ~~SAktGe 148 (160)
T cd04156 141 PCSAVTGE 148 (160)
T ss_pred EEECCCCC
T ss_conf 86688495