HHsearch alignment for GI: 254780263 and conserved domain: cd04157
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.20 E-value=6.6e-11 Score=86.70 Aligned_cols=141 Identities=19% Similarity=0.210 Sum_probs=83.8
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHHHHHHHHHHHH
Q ss_conf 99999046898878999999876444200131268686986292063789998219908999847873024677987740
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADYVKNMITGAT 93 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f~~~mi~g~~ 93 (392)
T Consensus 1 ~Il~lGl~~sGKTtil~~l~~~~~~-------~~~------~~pT~G~~~~~~~~~~~~~~iwD~~G~~~~r~lw~~y~~ 67 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQ-------SQI------IVPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYK 67 (162)
T ss_pred CEEEECCCCCCHHHHHHHHHCCCCC-------CCC------CCCCCCEEEEEEEECCEEEEEEECCCCCCCCHHHHHHHC
T ss_conf 9999999999889999999728987-------564------168507578999839988999985887442055898705
Q ss_pred CCCCEEEEECCCCC-CCCCHHHHHHHH-H---H--CCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEE-EEEEEC
Q ss_conf 02331452012344-332106778888-6---3--18760233100233356122211012321001110145-322102
Q gi|254780263|r 94 QADGAILVCAAEDG-PKPQTREHILLA-R---Q--IGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKY-SDDTPI 165 (392)
Q Consensus 94 ~~D~ailvVda~~G-~~~QT~eh~~l~-~---~--lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~-~~~~pi 165 (392)
T Consensus 68 ~~~~iI~VvDssd~~~~~~~~~~l~~ll~~~~~~~~~~P-iLI~~NK~D~~~~~~-~~----ei~~~l~l~~~~~~~~~i 141 (162)
T cd04157 68 NIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVP-ILFFANKMDLPDALT-AV----KITQLLGLENIKDKPWHI 141 (162)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHCHHHCCCCCE-EEEEEECCCCCCCCC-HH----HHHHHHCHHHHCCCCEEE
T ss_conf 674489997076388899999999999717655179845-999981477889999-99----999885866524896499
Q ss_pred CCCEEEEE
Q ss_conf 33114676
Q gi|254780263|r 166 IRGSALCA 173 (392)
Q Consensus 166 i~~sa~~g 173 (392)
T Consensus 142 ~~~SA~tG 149 (162)
T cd04157 142 FASNALTG 149 (162)
T ss_pred EEEECCCC
T ss_conf 99789789