HHsearch alignment for GI: 254780263 and conserved domain: cd04160
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.35 E-value=3.3e-12 Score=94.78 Aligned_cols=150 Identities=17% Similarity=0.154 Sum_probs=90.5
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHHHHHHHHHHHH
Q ss_conf 99999046898878999999876444200131268686986292063789998219908999847873024677987740
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADYVKNMITGAT 93 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f~~~mi~g~~ 93 (392)
T Consensus 1 ~ivilG~~~~GKTsll~~l~~~~~~~~-------~~~-~~~~~~Tvg~~~~~i~~~~~~l~iwD~~Gqe~~~~l~~~y~~ 72 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYK-------GLP-PSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYA 72 (167)
T ss_pred CEEEECCCCCCHHHHHHHHHHCCCCCC-------CCC-CCCCCCCCCEEEEEEEECCEEEEEEECCCCHHHHHHHHHHCC
T ss_conf 999999999888899998875036767-------776-554035313268999989999999968987888789987428
Q ss_pred CCCCEEEEECCCCC-CCCCHHHHHH-HH---HHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEECCCC
Q ss_conf 02331452012344-3321067788-88---6318760233100233356122211012321001110145322102331
Q gi|254780263|r 94 QADGAILVCAAEDG-PKPQTREHIL-LA---RQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTPIIRG 168 (392)
Q Consensus 94 ~~D~ailvVda~~G-~~~QT~eh~~-l~---~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~pii~~ 168 (392)
T Consensus 73 ~a~~ii~VvD~sd~~~~~~~~~~l~~~~~~~~~~~~p-ili~~NK~Dl~~~~~-~~ei~~~~~~~~~~~~-~~~~~~~~~ 149 (167)
T cd04160 73 ECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVP-LLILANKQDLPDALS-VEEIKEVFQDKAEEIG-RRDCLVLPV 149 (167)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCC-EEEEEECCCCCCCCC-HHHHHHHHHHHHHHHC-CCCCEEEEE
T ss_conf 9878999986686788999999999975110248962-999970667665778-9999999999999854-699899998
Q ss_pred EEEEEE
Q ss_conf 146764
Q gi|254780263|r 169 SALCAL 174 (392)
Q Consensus 169 sa~~g~ 174 (392)
T Consensus 150 SAktG~ 155 (167)
T cd04160 150 SALEGT 155 (167)
T ss_pred ECCCCC
T ss_conf 878294