HHsearch alignment for GI: 254780263 and conserved domain: cd04161
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=98.98 E-value=1.8e-09 Score=77.75 Aligned_cols=140 Identities=24% Similarity=0.261 Sum_probs=85.9
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHHHHHHHHHHHHC
Q ss_conf 99990468988789999998764442001312686869862920637899982199089998478730246779877400
Q gi|254780263|r 15 LSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADYVKNMITGATQ 94 (392)
Q Consensus 15 i~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f~~~mi~g~~~ 94 (392)
T Consensus 2 ililGLd~aGKTTil~~l~~~~---------~------~~~~PT~G~~~~~~~~~~~~l~~~DlgG~~~~R~lW~~Y~~~ 66 (167)
T cd04161 2 LLTVGLDNAGKTTLVSALQGEI---------P------KKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAE 66 (167)
T ss_pred EEEEEECCCCHHHHHHHHCCCC---------C------CCCCCCCCCCEEEEEECCEEEEEEECCCCHHHHHHHHHHCCC
T ss_conf 8999008998899999982899---------8------765087773179999899999999899877888999987347
Q ss_pred CCCEEEEECCCC-CCCCCHHHHHHHH----HHCCCCCEEEEECCCCCCCC---HHHHHHCCCCCCEEEEEEEEEEEEECC
Q ss_conf 233145201234-4332106778888----63187602331002333561---222110123210011101453221023
Q gi|254780263|r 95 ADGAILVCAAED-GPKPQTREHILLA----RQIGISSIVVYMNKVDAVDD---DELLDISEYEIRDLLKEHKYSDDTPII 166 (392)
Q Consensus 95 ~D~ailvVda~~-G~~~QT~eh~~l~----~~lgi~~iIv~iNKmD~v~~---~~~~~~i~~~i~~~l~~~~~~~~~pii 166 (392)
T Consensus 67 ~~gIIfVVDssD~~rl~eak~~L~~lL~~~~l~~~P-iLIlaNKqDl~~a~~~~ei~~~L--~L~~l~~~~--~~~~~I~ 141 (167)
T cd04161 67 AHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKP-ILVLANKQDKKNALLGADVIEYL--SLEKLVNEN--KSLCHIE 141 (167)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHCCHHHCCCE-EEEEEECCCCCCCCCHHHHHHHH--CCHHHCCCC--CCEEEEE
T ss_conf 765799985575889999999999996588778995-99998865761589999999881--974240899--8637999
Q ss_pred CCEEEEEE
Q ss_conf 31146764
Q gi|254780263|r 167 RGSALCAL 174 (392)
Q Consensus 167 ~~sa~~g~ 174 (392)
T Consensus 142 ~csA~tG~ 149 (167)
T cd04161 142 PCSAIEGL 149 (167)
T ss_pred ECEEECCC
T ss_conf 57644488