>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

Probab=98.12 E-value=1.5e-05 Score=53.44 Aligned_cols=143 Identities=17% Similarity=0.165 Sum_probs=80.7 Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEE-EEECCC--EEEEEEECCCCHHHHHHHH Q ss_conf 7999990468988789999998764442001312686869862920637899-982199--0899984787302467798 Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHV-SYETDK--RFYSHIDCPGHADYVKNMI 89 (392) Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~-~~~~~~--~~i~iiD~PGH~~f~~~mi 89 (392) T Consensus 2 ~KiVlvGD~~VGKTsLl~~f~~~------------~F~~~y--~pTi~~~~~~~~~vd~~~v~L~iWDTAGqE~y~~lr~ 67 (222) T cd04173 2 CKIVVVGDAECGKTALLQVFAKD------------AYPGSY--VPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRP 67 (222) T ss_pred CEEEEECCCCCCHHHHHHHHHCC------------CCCCCC--CCCEEEEEEEEEEECCEEEEEEEECCCCCCHHHHHHH T ss_conf 09999898998989999999639------------999984--7845877899999999999999976888503455678 Q ss_pred HHHHCCCCEEEEECCCCCCCCCHHHHH----H-HHHH--CCCCCEEEEECCCCCCCCHHH-HHHCCC--------CCCEE Q ss_conf 774002331452012344332106778----8-8863--187602331002333561222-110123--------21001 Q gi|254780263|r 90 TGATQADGAILVCAAEDGPKPQTREHI----L-LARQ--IGISSIVVYMNKVDAVDDDEL-LDISEY--------EIRDL 153 (392) Q Consensus 90 ~g~~~~D~ailvVda~~G~~~QT~eh~----~-l~~~--lgi~~iIv~iNKmD~v~~~~~-~~~i~~--------~i~~~ 153 (392) T Consensus 68 ~yyr~a~~~llvfdit~~---~SF~~v~~~W~~ei~~~~p~~p-iiLVGnK~DLR~d~~~~~el~~~~~~pVt~eeg~~l 143 (222) T cd04173 68 LAYPDSDAVLICFDISRP---ETLDSVLKKWQGETQEFCPNAK-VVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVL 143 (222) T ss_pred HHCCCCCEEEEEEECCCH---HHHHHHHHHHHHHHHHHCCCCC-EEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHH T ss_conf 750369899999838977---8899999999999998589997-899958742456878899998557888789999999 Q ss_pred EEEEEEEEEEECCCCEEEEEEEC Q ss_conf 11014532210233114676411 Q gi|254780263|r 154 LKEHKYSDDTPIIRGSALCALQG 176 (392) Q Consensus 154 l~~~~~~~~~pii~~sa~~g~~~ 176 (392) T Consensus 144 A~~~g---a~~y~EcSAk~~~n~ 163 (222) T cd04173 144 AKQVG---AVSYVECSSRSSERS 163 (222) T ss_pred HHHCC---CCEEEECCCCCCCCC T ss_conf 99769---988998884868749

HHsearch alignment for GI: 254780263 and conserved domain: cd04173