HHsearch alignment for GI: 254780263 and conserved domain: cd04175

>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=98.58  E-value=1.6e-07  Score=65.74  Aligned_cols=141  Identities=16%  Similarity=0.201  Sum_probs=81.6

Q ss_pred             EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEE-EEEC--CCEEEEEEECCCCHHHHHHHH
Q ss_conf             7999990468988789999998764442001312686869862920637899-9821--990899984787302467798
Q gi|254780263|r   13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHV-SYET--DKRFYSHIDCPGHADYVKNMI   89 (392)
Q Consensus        13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~-~~~~--~~~~i~iiD~PGH~~f~~~mi   89 (392)
T Consensus         2 fKIvllGd~~VGKTsli~r~~~~~------------f~~~--y~pTi~~~~~k~i~~~~~~~~l~iwDtaG~e~~~~l~~   67 (164)
T cd04175           2 YKLVVLGSGGVGKSALTVQFVQGI------------FVEK--YDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRD   67 (164)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHCC------------CCCC--CCCCEEEEEEEEEEECCEEEEEEECCCCCCHHHHHHHH
T ss_conf             299998999975999999997092------------8865--68840468999999999999998514775432456788


Q ss_pred             HHHHCCCCEEEEECCCCCCCCCHHHHH--HHHHH---CCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEE
Q ss_conf             774002331452012344332106778--88863---1876023310023335612221101232100111014532210
Q gi|254780263|r   90 TGATQADGAILVCAAEDGPKPQTREHI--LLARQ---IGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTP  164 (392)
Q Consensus        90 ~g~~~~D~ailvVda~~G~~~QT~eh~--~l~~~---lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~p  164 (392)
T Consensus        68 ~y~~~a~~~ilvydvt~~~Sf~~~~~~~~~i~~~~~~~~~p-iilvgNK~DL~~~r~---V~~~~~~~~a~~~----~~~  139 (164)
T cd04175          68 LYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVP-MILVGNKCDLEDERV---VGKEQGQNLARQW----GCA  139 (164)
T ss_pred             HHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCE-EEEEECCCCCHHCCC---CCHHHHHHHHHHC----CCE
T ss_conf             87357868999960787778999999999999862899963-998521457222068---9999999999985----999


Q ss_pred             CCCCEEEEEEE
Q ss_conf             23311467641
Q gi|254780263|r  165 IIRGSALCALQ  175 (392)
Q Consensus       165 ii~~sa~~g~~  175 (392)
T Consensus       140 ~~E~SAk~~~n  150 (164)
T cd04175         140 FLETSAKAKIN  150 (164)
T ss_pred             EEEECCCCCCC
T ss_conf             99966898817