HHsearch alignment for GI: 254780263 and conserved domain: pfam02492
>pfam02492 cobW CobW/HypB/UreG, nucleotide-binding domain. This domain is found in HypB, a hydrogenase expression / formation protein, and UreG a urease accessory protein. Both these proteins contain a P-loop nucleotide binding motif. HypB has GTPase activity and is a guanine nucleotide binding protein. It is not known whether UreG binds GTP or some other nucleotide. Both enzymes are involved in nickel binding. HypB can store nickel and is required for nickel dependent hydrogenase expression. UreG is required for functional incorporation of the urease nickel metallocenter. GTP hydrolysis may required by these proteins for nickel incorporation into other nickel proteins. This family of domains also contains P47K, a Pseudomonas chlororaphis protein needed for nitrile hydratase expression, and the cobW gene product, which may be involved in cobalamin biosynthesis in Pseudomonas denitrificans.
Probab=97.38 E-value=0.00068 Score=43.23 Aligned_cols=142 Identities=21% Similarity=0.262 Sum_probs=69.5
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHH-------CCCC--CCCCHHHHHCCCEEE-EEE--E------EE--------EC
Q ss_conf 999904689887899999987644420-------0131--268686986292063-789--9------98--------21
Q gi|254780263|r 15 LSTIGHVDHGKTTLTAAITKYYSEEKK-------EYGD--IDSAPEEKLRGITIA-TAH--V------SY--------ET 68 (392)
Q Consensus 15 i~~iGhvd~GKSTL~~~L~~~~~~~~~-------~~~~--~D~~~~E~~rGiTi~-~~~--~------~~--------~~ 68 (392)
T Consensus 3 ~iitGFLGsGKTTll~~ll~~~~-~~~~~avI~Ne~g~~~iD~~ll-~~~~~~v~el~~GciCc~~~~d~~~~l~~l~~~ 80 (174)
T pfam02492 3 TVLTGFLGSGKTTLLEHLLRDNR-EGLKIAVIVNDFGETGIDAELL-RETGAEIVELNNGCICCTIREDLSMVLEALLEL 80 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHHCC-CCCCEEEEEECCCCHHHHHHHH-HHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 99934887889999999998444-8984799993365302079998-706961899748866454333699999999855
Q ss_pred --CCEEEEEEECCCCHHHHHHHHHH--HHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHH
Q ss_conf --99089998478730246779877--40023314520123443321067788886318760233100233356122211
Q gi|254780263|r 69 --DKRFYSHIDCPGHADYVKNMITG--ATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLD 144 (392)
Q Consensus 69 --~~~~i~iiD~PGH~~f~~~mi~g--~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~ 144 (392)
T Consensus 81 ~~~~~d~iiIE~sGla~p~-~i~~~~~~~~~~~~i~vvDa~~~~~~~-~~~~~~~~Qi~~AD~v-vlNK~Dl~~~~~~l~ 157 (174)
T pfam02492 81 KLPRLDLLFIETTGLACPA-PVLDLRSDLGLDGVVTVVDVKNFTEGE-DIPEKAPDQIAFADLI-VINKTDLAPAVGALE 157 (174)
T ss_pred CCCCCCEEEEECCCCCCHH-HHHHHHHCCCCCEEEEEEECHHHHHCC-CCHHHHHHHHHHCCEE-EEEHHHCCCCHHHHH
T ss_conf 7899999999587667707-777653202654599999723433002-0078999999876999-984665378276999
Q ss_pred HCCCCCCEEEEEEEEEEEEECCC
Q ss_conf 01232100111014532210233
Q gi|254780263|r 145 ISEYEIRDLLKEHKYSDDTPIIR 167 (392)
Q Consensus 145 ~i~~~i~~~l~~~~~~~~~pii~ 167 (392)
T Consensus 158 ~~~~~i~~----l--NP~A~Iip 174 (174)
T pfam02492 158 KLEADLRR----L--NPEAPIIP 174 (174)
T ss_pred HHHHHHHH----H--CCCCEECC
T ss_conf 99999999----7--89993669