HHsearch alignment for GI: 254780263 and conserved domain: pfam02492

>pfam02492 cobW CobW/HypB/UreG, nucleotide-binding domain. This domain is found in HypB, a hydrogenase expression / formation protein, and UreG a urease accessory protein. Both these proteins contain a P-loop nucleotide binding motif. HypB has GTPase activity and is a guanine nucleotide binding protein. It is not known whether UreG binds GTP or some other nucleotide. Both enzymes are involved in nickel binding. HypB can store nickel and is required for nickel dependent hydrogenase expression. UreG is required for functional incorporation of the urease nickel metallocenter. GTP hydrolysis may required by these proteins for nickel incorporation into other nickel proteins. This family of domains also contains P47K, a Pseudomonas chlororaphis protein needed for nitrile hydratase expression, and the cobW gene product, which may be involved in cobalamin biosynthesis in Pseudomonas denitrificans.
Probab=97.38  E-value=0.00068  Score=43.23  Aligned_cols=142  Identities=21%  Similarity=0.262  Sum_probs=69.5

Q ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHHH-------CCCC--CCCCHHHHHCCCEEE-EEE--E------EE--------EC
Q ss_conf             999904689887899999987644420-------0131--268686986292063-789--9------98--------21
Q gi|254780263|r   15 LSTIGHVDHGKTTLTAAITKYYSEEKK-------EYGD--IDSAPEEKLRGITIA-TAH--V------SY--------ET   68 (392)
Q Consensus        15 i~~iGhvd~GKSTL~~~L~~~~~~~~~-------~~~~--~D~~~~E~~rGiTi~-~~~--~------~~--------~~   68 (392)
T Consensus         3 ~iitGFLGsGKTTll~~ll~~~~-~~~~~avI~Ne~g~~~iD~~ll-~~~~~~v~el~~GciCc~~~~d~~~~l~~l~~~   80 (174)
T pfam02492         3 TVLTGFLGSGKTTLLEHLLRDNR-EGLKIAVIVNDFGETGIDAELL-RETGAEIVELNNGCICCTIREDLSMVLEALLEL   80 (174)
T ss_pred             EEEECCCCCCHHHHHHHHHHHCC-CCCCEEEEEECCCCHHHHHHHH-HHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHC
T ss_conf             99934887889999999998444-8984799993365302079998-706961899748866454333699999999855


Q ss_pred             --CCEEEEEEECCCCHHHHHHHHHH--HHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHH
Q ss_conf             --99089998478730246779877--40023314520123443321067788886318760233100233356122211
Q gi|254780263|r   69 --DKRFYSHIDCPGHADYVKNMITG--ATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLD  144 (392)
Q Consensus        69 --~~~~i~iiD~PGH~~f~~~mi~g--~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~  144 (392)
T Consensus        81 ~~~~~d~iiIE~sGla~p~-~i~~~~~~~~~~~~i~vvDa~~~~~~~-~~~~~~~~Qi~~AD~v-vlNK~Dl~~~~~~l~  157 (174)
T pfam02492        81 KLPRLDLLFIETTGLACPA-PVLDLRSDLGLDGVVTVVDVKNFTEGE-DIPEKAPDQIAFADLI-VINKTDLAPAVGALE  157 (174)
T ss_pred             CCCCCCEEEEECCCCCCHH-HHHHHHHCCCCCEEEEEEECHHHHHCC-CCHHHHHHHHHHCCEE-EEEHHHCCCCHHHHH
T ss_conf             7899999999587667707-777653202654599999723433002-0078999999876999-984665378276999


Q ss_pred             HCCCCCCEEEEEEEEEEEEECCC
Q ss_conf             01232100111014532210233
Q gi|254780263|r  145 ISEYEIRDLLKEHKYSDDTPIIR  167 (392)
Q Consensus       145 ~i~~~i~~~l~~~~~~~~~pii~  167 (392)
T Consensus       158 ~~~~~i~~----l--NP~A~Iip  174 (174)
T pfam02492       158 KLEADLRR----L--NPEAPIIP  174 (174)
T ss_pred             HHHHHHHH----H--CCCCEECC
T ss_conf             99999999----7--89993669