HHsearch alignment for GI: 254780263 and conserved domain: pfam04670
>pfam04670 Gtr1_RagA Gtr1/RagA G protein conserved region. GTR1 was first identified in S. cerevisiae as a suppressor of a mutation in RCC1. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1. Included in this family is the human Rag C, a novel protein that has been shown to interact with RagA/B.
Probab=98.40 E-value=1.4e-06 Score=59.80 Aligned_cols=133 Identities=21% Similarity=0.298 Sum_probs=85.6
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEEC-CCEEEEEEECCCCHHHHHHHH----
Q ss_conf 999904689887899999987644420013126868698629206378999821-990899984787302467798----
Q gi|254780263|r 15 LSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYET-DKRFYSHIDCPGHADYVKNMI---- 89 (392)
Q Consensus 15 i~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~iiD~PGH~~f~~~mi---- 89 (392)
T Consensus 2 iLLMG~~~sGKTSi~~vIF~~~~p~-------dT----~~L~~T~~ve~~~v~~~~~l~l~iwD~pGq~~f~e~~~~~~~ 70 (230)
T pfam04670 2 VLLMGLRGSGKSSMRSIIFSNYSPR-------DT----LRLGATIDVEQSHVRFLGNLTLNLWDCPGQDDFMENYLTRQK 70 (230)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCHH-------HH----CCCCCCCCEEEEEEECCCCCEEEEEECCCCHHHHHHHCCCCH
T ss_conf 7875689998777699986799821-------41----202577776778774168736899976983535441200223
Q ss_pred -HHHHCCCCEEEEECCCCCCCCC--HH--HHHHHHHHC--CCCCEEEEECCCCCCCCHHH---HHHCCCCCCEEEEEEEE
Q ss_conf -7740023314520123443321--06--778888631--87602331002333561222---11012321001110145
Q gi|254780263|r 90 -TGATQADGAILVCAAEDGPKPQ--TR--EHILLARQI--GISSIVVYMNKVDAVDDDEL---LDISEYEIRDLLKEHKY 159 (392)
Q Consensus 90 -~g~~~~D~ailvVda~~G~~~Q--T~--eh~~l~~~l--gi~~iIv~iNKmD~v~~~~~---~~~i~~~i~~~l~~~~~ 159 (392)
T Consensus 71 e~if~~v~~lIyV~D~q~~~~~~~l~~~~~~l~~~~~~sp~~~-v~vfiHK~D~l~~d~r~~~~~~~~~~i~~~~~~~~~ 149 (230)
T pfam04670 71 EHIFSNVGVLIYVFDVESREYEEDLATLVKIIEALYQYSPNAK-VFVLIHKMDLLSEDERKEIFEDRKEEIIEEIEDFGI 149 (230)
T ss_pred HHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCE-EEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 5476447889999968886099999999999999998399988-999996035888667899999999999998765688