HHsearch alignment for GI: 254780263 and conserved domain: pfam05049
>pfam05049 IIGP Interferon-inducible GTPase (IIGP). Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing.
Probab=98.50 E-value=1.2e-07 Score=66.43 Aligned_cols=169 Identities=18% Similarity=0.281 Sum_probs=99.8
Q ss_pred HCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEE-EEEEEECCC-EEEEEEECCCC---
Q ss_conf 1038827999990468988789999998764442001312686869862920637-899982199-08999847873---
Q gi|254780263|r 7 VRNKESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIAT-AHVSYETDK-RFYSHIDCPGH--- 81 (392)
Q Consensus 7 ~~~k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~-~~~~~~~~~-~~i~iiD~PGH--- 81 (392)
T Consensus 30 ~~~~~~lnIavtGesG~GkSsfINalRg-~g~e~~~aA~t---------GvvetT~~~~~Y~hp~~pnV~lwDLPG~gt~ 99 (375)
T pfam05049 30 EISSAPLKIAVTGDSGNGKSSFINALRG-IGHEEDGSAPT---------GVVETTMKRTPYSHPHFPNVVLWDLPGLGAT 99 (375)
T ss_pred HHHCCCEEEEEECCCCCCHHHHHHHHHC-CCCCCCCCCCC---------CCEEECCCCCCCCCCCCCCEEEECCCCCCCC
T ss_conf 5443824799854899867899998747-89877776876---------8766326755678999998079628999989
Q ss_pred ----HHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHH---HHCCCCCEEEEECCCCC------------CCCHHH
Q ss_conf ----02467798774002331452012344332106778888---63187602331002333------------561222
Q gi|254780263|r 82 ----ADYVKNMITGATQADGAILVCAAEDGPKPQTREHILLA---RQIGISSIVVYMNKVDA------------VDDDEL 142 (392)
Q Consensus 82 ----~~f~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~---~~lgi~~iIv~iNKmD~------------v~~~~~ 142 (392)
T Consensus 100 ~f~~~~Yl~~~--~f~~yDfFiiiss~rf-----~~n~v~LAk~i~~mg-K~fyfVrtKvD~Dl~~e~~~kp~~F~~e~~ 171 (375)
T pfam05049 100 NFTVETYLEEM--KFSEYDFFIIISSERF-----SLNDVKLAKAIQRMG-KRFYFVRTKLDSDLSNEQKGKPQTFPKEKV 171 (375)
T ss_pred CCCHHHHHHHC--CCCCCCEEEEEECCCC-----CHHHHHHHHHHHHHC-CCEEEEEEECCCCCHHHHHCCCCCCCHHHH
T ss_conf 98989999874--8564778999967754-----320189999999838-947999862367606576258999998999
Q ss_pred HHHCCCCCCEEEEEEEEEEEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHCCCCCCCC
Q ss_conf 110123210011101453221023311467641144456521233203443102522221
Q gi|254780263|r 143 LDISEYEIRDLLKEHKYSDDTPIIRGSALCALQGTNKELGEDSIHALMKAVDTHIPTPQR 202 (392)
Q Consensus 143 ~~~i~~~i~~~l~~~~~~~~~pii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~~~~p~~ 202 (392)
T Consensus 172 Lq~IR~~c~~~L~k~gv~-eP~VFLvS--------nfdl~~yDFp~L~~TL~~eLP~hKR 222 (375)
T pfam05049 172 LQNIQDNCRNNLQKEGVK-EPPIFLVS--------NLDPSHYDFPKLRDTLLKDLPIIKR 222 (375)
T ss_pred HHHHHHHHHHHHHHCCCC-CCCEEEEE--------CCCHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 999999999999875888-99789981--------7881326818999999987368678