HHsearch alignment for GI: 254780263 and conserved domain: pfam08477
>pfam08477 Miro Miro-like protein. Mitochondrial Rho proteins (Miro-1 and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis.
Probab=98.41 E-value=2.8e-06 Score=58.01 Aligned_cols=111 Identities=22% Similarity=0.271 Sum_probs=69.7
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHHHHHHHHHHHHC
Q ss_conf 99990468988789999998764442001312686869862920637899982199089998478730246779877400
Q gi|254780263|r 15 LSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADYVKNMITGATQ 94 (392)
Q Consensus 15 i~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f~~~mi~g~~~ 94 (392)
T Consensus 2 ivvvG~~~vGKTSLi~r~~~~~f~~~--------~~~-~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~ 72 (118)
T pfam08477 2 VVVIGDKGSGKSSLLSQLVGGEFPPE--------IPE-EIQGDTLAVDTLEVDGDTELLHIWDFGGREELKFEHIIFMKT 72 (118)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCC--------CCC-CCCCCEEEEEEEEECCCEEEEEEEECCCCHHHHHHHHHHCCC
T ss_conf 99999899789999999983988876--------667-877776888999999928999999899967776666542258
Q ss_pred CCCEEEEECCCCCCCCCHHHH----HHHHHH--CCCCCEEEEECCCC
Q ss_conf 233145201234433210677----888863--18760233100233
Q gi|254780263|r 95 ADGAILVCAAEDGPKPQTREH----ILLARQ--IGISSIVVYMNKVD 135 (392)
Q Consensus 95 ~D~ailvVda~~G~~~QT~eh----~~l~~~--lgi~~iIv~iNKmD 135 (392)
T Consensus 73 ~d~~ilvydit~~~Sf~~~~~~~~~i~~~~~~~~~~p-iilVGnK~D 118 (118)
T pfam08477 73 ADAILLVYDLTDRESLNRVSRLIAWLPHLRKLGKKIP-VILVGNKFD 118 (118)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCC-EEEEEECCC
T ss_conf 7467899979987899999999999999982099998-899996859