HHsearch alignment for GI: 254780263 and conserved domain: smart00176

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=98.22  E-value=2.2e-06  Score=58.71  Aligned_cols=131  Identities=21%  Similarity=0.198  Sum_probs=75.6

Q ss_pred             EECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEE--EEEEEEEECCC--EEEEEEECCCCHHHHHHHHHH-H
Q ss_conf             904689887899999987644420013126868698629206--37899982199--089998478730246779877-4
Q gi|254780263|r   18 IGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITI--ATAHVSYETDK--RFYSHIDCPGHADYVKNMITG-A   92 (392)
Q Consensus        18 iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi--~~~~~~~~~~~--~~i~iiD~PGH~~f~~~mi~g-~   92 (392)
T Consensus         1 vGD~gVGKTsli~R~~~~~------------F--~~~y~pTiGvd~~~~~~~~~~~~i~l~iWDTAGqE~f~s-l~~~yy   65 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGE------------F--EKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGG-LRDGYY   65 (200)
T ss_pred             CCCCCCCHHHHHHHHHCCC------------C--CCCCCCCEEEEEEEEEEEECCEEEEEEEEECCCCCCCCC-CCHHHC
T ss_conf             9898878999999994099------------9--999788714898999999899899999998988700011-026550


Q ss_pred             HCCCCEEEEECCCCCCCCCHHHHH-----HHHHH-CCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEECC
Q ss_conf             002331452012344332106778-----88863-187602331002333561222110123210011101453221023
Q gi|254780263|r   93 TQADGAILVCAAEDGPKPQTREHI-----LLARQ-IGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTPII  166 (392)
Q Consensus        93 ~~~D~ailvVda~~G~~~QT~eh~-----~l~~~-lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~pii  166 (392)
T Consensus        66 r~a~~~IlvfDvt~~---~SF~~l~~W~~~l~~~~~~ip-iiLvGNK~DL~~r-~----V~~e~~~~a~~~----~~~y~  132 (200)
T smart00176       66 IQGQCAIIMFDVTAR---VTYKNVPNWHRDLVRVCENIP-IVLCGNKVDVKDR-K----VKAKSITFHRKK----NLQYY  132 (200)
T ss_pred             CCCCEEEEEEECCCH---HHHHHHHHHHHHHHHHCCCCC-EEEEEECCCCCCC-C----CCHHHHHHHHHC----CCCEE
T ss_conf             578788999635877---899989999999998579998-8999988757404-3----659999999987----99789


Q ss_pred             CCEEEEEEEC
Q ss_conf             3114676411
Q gi|254780263|r  167 RGSALCALQG  176 (392)
Q Consensus       167 ~~sa~~g~~~  176 (392)
T Consensus       133 EtSAKt~~Nv  142 (200)
T smart00176      133 DISAKSNYNF  142 (200)
T ss_pred             EEECCCCCCH
T ss_conf             8300469697