RPSBLAST alignment for GI: 254780263 and conserved domain: cd04167
>gnl|CDD|133367 cd04167, Snu114p, Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs. Length = 213
Score = 63.8 bits (156), Expect = 8e-11
Identities = 36/131 (27%), Positives = 59/131 (45%), Gaps = 15/131 (11%)
Query: 18 IGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPE--------EKLRGITIATAHVSY-ET 68
GH+ HGKT+L + + + G P E+ RGI+I ++ +S
Sbjct: 6 AGHLHHGKTSLLDMLI-EQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLP 64
Query: 69 DKRFYSH----IDCPGHADYVKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGI 124
D + S+ ID PGH +++ + +DG +LV +G T I A G+
Sbjct: 65 DSKGKSYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGL 124
Query: 125 SSIVVYMNKVD 135
IV+ +NK+D
Sbjct: 125 -PIVLVINKID 134