HHsearch alignment for GI: 254780264 and conserved domain: COG4108

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis].
Probab=100.00  E-value=0  Score=613.90  Aligned_cols=449  Identities=28%  Similarity=0.471  Sum_probs=378.1

Q ss_pred             CHHHEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCC----EECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEE
Q ss_conf             710252799986878897789999999808732142201795----6137808898708537640799996077787138
Q gi|254780264|r    6 KIEDSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGS----ATMDWMEQEQERGITITSASTTVFWPGRDGGQKK   81 (701)
Q Consensus         6 ~~e~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~----~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~   81 (701)
T Consensus         8 Ev~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AGtVk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~-----~~~   82 (528)
T COG4108           8 EVARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYA-----DCL   82 (528)
T ss_pred             HHHHHCCEEEEECCCCCCCCHHHHHHHHCCHHHHCCEEEECCCCCCCCCHHHHHHHHCCCEEEEEEEEEECC-----CEE
T ss_conf             986434036885688885118899997230343055012225776342277888875685587657876038-----848


Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCCC
Q ss_conf             99981798755289999999860456999955888883479999999873997899981767658755556664111102
Q gi|254780264|r   82 LTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKMGADFYRSVEMISSRLG  161 (701)
Q Consensus        82 iNlIDTPGH~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~~~d~~~~l~~i~~~l~  161 (701)
T Consensus        83 iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR~~rdP~ELLdEiE~~L~  162 (528)
T COG4108          83 VNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDREGRDPLELLDEIEEELG  162 (528)
T ss_pred             EECCCCCCCCCCCHHHHHHHHHHHEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHC
T ss_conf             86147998654323678999864104689860358668899999998505984699750236566886899999999857


Q ss_pred             CCCCEECCCCCCCCCCCEEEEEHHHHHHCCCCCCCCCCCE--EE---EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             6833000234555665302442234431145222698513--87---400431788999999886300234578999863
Q gi|254780264|r  162 ANPLVIQLPVGSESNFQGVIDLVEMKALLWKNEDLGSSWD--VV---EIPEDMKDSANSYRDKMIESIVELDDSAMDSYL  236 (701)
Q Consensus       162 ~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~lle~i~~~dd~~~~~~l  236 (701)
T Consensus       163 i~~~PitWPIG~gk~F~Gvy~l~~~~v~~y~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~ee~--------EL~~  234 (528)
T COG4108         163 IQCAPITWPIGMGKDFKGVYHLYNDEVELYESGHTDQERRADIVKGLDNPELDALLGEDLAEQLREEL--------ELVQ  234 (528)
T ss_pred             CCEECCCCCCCCCCCCCEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCHHHHHHHHHHH--------HHHH
T ss_conf             75035524456885643223503587998426777654434444578886777762447999999999--------9997


Q ss_pred             C-CCCCCHHHHHHHHCCEEECCEEEECCCCCEECCCCHHHHHHHHHHHCCCHHHEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             2-778998898730000031010032343100012210248898987178621300012222456752101123456542
Q gi|254780264|r  237 Q-GESFSSDRIRSLIRLGTISVKFFPVLCGSSFKNKGVQPLLDAVVDYLPSPLDVRAIKGVDVKSNSEIDVSAVDSSPLS  315 (701)
Q Consensus       237 ~-~~~~~~~~l~~~l~~~~~~~~~~pv~~gsa~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~pl~  315 (701)
T Consensus       235 ~a~~~Fd--------~~~fl~G~~TPVFFGSAl~NFGV~~~L~~~~~~AP~P~~r~~~~~---------~v~p~-e~kfs  296 (528)
T COG4108         235 GAGNEFD--------LEAFLAGELTPVFFGSALGNFGVDHFLDALVDWAPSPRARQADTR---------EVEPT-EDKFS  296 (528)
T ss_pred             HHCCCCC--------HHHHHCCCCCCEEEHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCC---------CCCCC-CCCCC
T ss_conf             4133208--------898856960115703323115889999999963899865446667---------31688-77543


Q ss_pred             EECCCCCCC---CCCCCEEHHHHHCCCCCCCCEEEEECCCCCCEEHHHHHHHCCCEEEEEECCCCCEEEECCCCCCCCCC
Q ss_conf             010332116---54671000011013345683689832655411104532104744542003567326413874443211
Q gi|254780264|r  316 MLAFKVMAD---SFVGSLTFCRIYSGKISKGDSLLNTVKGKKERVGRMLQMHSNSREDIDEAYCGDIIALAGLKETTTGD  392 (701)
Q Consensus       316 ~~v~K~~~d---~~~G~~a~~RV~SGtL~~gd~i~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I~Gl~~~~~gd  392 (701)
T Consensus       297 GFVFKIQANMDp~HRDRIAFmRV~SGkferGMk~~~~rtgK~~~ls~~~~f~A~dRe~ve~A~aGDIIGl~nhGt~~IGD  376 (528)
T COG4108         297 GFVFKIQANMDPKHRDRIAFMRVCSGKFERGMKVTHVRTGKDVKLSDALTFMAQDRETVEEAYAGDIIGLHNHGTIQIGD  376 (528)
T ss_pred             EEEEEEECCCCCCCCCCEEEEEECCCCCCCCCEEEEEECCCCEEECCCHHHHHHHHHHHHHCCCCCEEECCCCCCEEECC
T ss_conf             48999974899433420367863056435886533024487256161076764216657542687767146787213266


Q ss_pred             CCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEECCHHHHHHHHHHHHH
Q ss_conf             01277884101566366521357776156432202578888541027420144504575468760664789999999874
Q gi|254780264|r  393 TLCDPSRPIVLERMDFPEPVIQIAIEPKSKGDQERMSLALSRLVAEDPSLRVSMDPNSGQTNLSGMGELHLEIIVDRMLR  472 (701)
Q Consensus       393 Tl~~~~~~~~~~~~~~~~Pvv~vaIep~~~~d~~kL~~~L~~L~~~Dp~l~v~~~~etGE~il~g~GElhLev~l~~L~~  472 (701)
T Consensus       377 T~t~G-e~~~f~giP~FaPElfrrvrlkd~~K~Kql~Kgl~QL~eEGa-vQ~f~p~~~~d~IlGAVG~LQFeV~~~RL~~  454 (528)
T COG4108         377 TFTEG-EKLKFTGIPNFAPELFRRVRLKDPLKQKQLKKGLEQLAEEGA-VQVFKPLDGNDLILGAVGQLQFEVVQARLKN  454 (528)
T ss_pred             EECCC-CEEEECCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCE-EEEECCCCCCCCEEEEECCHHHHHHHHHHHH
T ss_conf             63158-556536899879999998861786888999999999865575-6996037788865874100137999999876


Q ss_pred             HCCCCCEECCCCCCC
Q ss_conf             111332010541011
Q gi|254780264|r  473 EFKVDANVGAPYVSY  487 (701)
Q Consensus       473 ~f~iei~vs~P~V~y  487 (701)
T Consensus       455 EY~ve~~~e~~~~~~  469 (528)
T COG4108         455 EYNVEAVFEPVNFST  469 (528)
T ss_pred             HHCCEEEEEECCCEE
T ss_conf             518707874055148