HHsearch alignment for GI: 254780264 and conserved domain: COG4108
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis].
Probab=100.00 E-value=0 Score=613.90 Aligned_cols=449 Identities=28% Similarity=0.471 Sum_probs=378.1
Q ss_pred CHHHEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCC----EECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEE
Q ss_conf 710252799986878897789999999808732142201795----6137808898708537640799996077787138
Q gi|254780264|r 6 KIEDSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGS----ATMDWMEQEQERGITITSASTTVFWPGRDGGQKK 81 (701)
Q Consensus 6 ~~e~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~----~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~ 81 (701)
T Consensus 8 Ev~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AGtVk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~-----~~~ 82 (528)
T COG4108 8 EVARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYA-----DCL 82 (528)
T ss_pred HHHHHCCEEEEECCCCCCCCHHHHHHHHCCHHHHCCEEEECCCCCCCCCHHHHHHHHCCCEEEEEEEEEECC-----CEE
T ss_conf 986434036885688885118899997230343055012225776342277888875685587657876038-----848
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCCC
Q ss_conf 99981798755289999999860456999955888883479999999873997899981767658755556664111102
Q gi|254780264|r 82 LTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKMGADFYRSVEMISSRLG 161 (701)
Q Consensus 82 iNlIDTPGH~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~~~d~~~~l~~i~~~l~ 161 (701)
T Consensus 83 iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR~~rdP~ELLdEiE~~L~ 162 (528)
T COG4108 83 VNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDREGRDPLELLDEIEEELG 162 (528)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHC
T ss_conf 86147998654323678999864104689860358668899999998505984699750236566886899999999857
Q ss_pred CCCCEECCCCCCCCCCCEEEEEHHHHHHCCCCCCCCCCCE--EE---EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6833000234555665302442234431145222698513--87---400431788999999886300234578999863
Q gi|254780264|r 162 ANPLVIQLPVGSESNFQGVIDLVEMKALLWKNEDLGSSWD--VV---EIPEDMKDSANSYRDKMIESIVELDDSAMDSYL 236 (701)
Q Consensus 162 ~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~lle~i~~~dd~~~~~~l 236 (701)
T Consensus 163 i~~~PitWPIG~gk~F~Gvy~l~~~~v~~y~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~ee~--------EL~~ 234 (528)
T COG4108 163 IQCAPITWPIGMGKDFKGVYHLYNDEVELYESGHTDQERRADIVKGLDNPELDALLGEDLAEQLREEL--------ELVQ 234 (528)
T ss_pred CCEECCCCCCCCCCCCCEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCHHHHHHHHHHH--------HHHH
T ss_conf 75035524456885643223503587998426777654434444578886777762447999999999--------9997
Q ss_pred C-CCCCCHHHHHHHHCCEEECCEEEECCCCCEECCCCHHHHHHHHHHHCCCHHHEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 2-778998898730000031010032343100012210248898987178621300012222456752101123456542
Q gi|254780264|r 237 Q-GESFSSDRIRSLIRLGTISVKFFPVLCGSSFKNKGVQPLLDAVVDYLPSPLDVRAIKGVDVKSNSEIDVSAVDSSPLS 315 (701)
Q Consensus 237 ~-~~~~~~~~l~~~l~~~~~~~~~~pv~~gsa~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~pl~ 315 (701)
T Consensus 235 ~a~~~Fd--------~~~fl~G~~TPVFFGSAl~NFGV~~~L~~~~~~AP~P~~r~~~~~---------~v~p~-e~kfs 296 (528)
T COG4108 235 GAGNEFD--------LEAFLAGELTPVFFGSALGNFGVDHFLDALVDWAPSPRARQADTR---------EVEPT-EDKFS 296 (528)
T ss_pred HHCCCCC--------HHHHHCCCCCCEEEHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCC---------CCCCC-CCCCC
T ss_conf 4133208--------898856960115703323115889999999963899865446667---------31688-77543
Q ss_pred EECCCCCCC---CCCCCEEHHHHHCCCCCCCCEEEEECCCCCCEEHHHHHHHCCCEEEEEECCCCCEEEECCCCCCCCCC
Q ss_conf 010332116---54671000011013345683689832655411104532104744542003567326413874443211
Q gi|254780264|r 316 MLAFKVMAD---SFVGSLTFCRIYSGKISKGDSLLNTVKGKKERVGRMLQMHSNSREDIDEAYCGDIIALAGLKETTTGD 392 (701)
Q Consensus 316 ~~v~K~~~d---~~~G~~a~~RV~SGtL~~gd~i~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I~Gl~~~~~gd 392 (701)
T Consensus 297 GFVFKIQANMDp~HRDRIAFmRV~SGkferGMk~~~~rtgK~~~ls~~~~f~A~dRe~ve~A~aGDIIGl~nhGt~~IGD 376 (528)
T COG4108 297 GFVFKIQANMDPKHRDRIAFMRVCSGKFERGMKVTHVRTGKDVKLSDALTFMAQDRETVEEAYAGDIIGLHNHGTIQIGD 376 (528)
T ss_pred EEEEEEECCCCCCCCCCEEEEEECCCCCCCCCEEEEEECCCCEEECCCHHHHHHHHHHHHHCCCCCEEECCCCCCEEECC
T ss_conf 48999974899433420367863056435886533024487256161076764216657542687767146787213266
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEECCHHHHHHHHHHHHH
Q ss_conf 01277884101566366521357776156432202578888541027420144504575468760664789999999874
Q gi|254780264|r 393 TLCDPSRPIVLERMDFPEPVIQIAIEPKSKGDQERMSLALSRLVAEDPSLRVSMDPNSGQTNLSGMGELHLEIIVDRMLR 472 (701)
Q Consensus 393 Tl~~~~~~~~~~~~~~~~Pvv~vaIep~~~~d~~kL~~~L~~L~~~Dp~l~v~~~~etGE~il~g~GElhLev~l~~L~~ 472 (701)
T Consensus 377 T~t~G-e~~~f~giP~FaPElfrrvrlkd~~K~Kql~Kgl~QL~eEGa-vQ~f~p~~~~d~IlGAVG~LQFeV~~~RL~~ 454 (528)
T COG4108 377 TFTEG-EKLKFTGIPNFAPELFRRVRLKDPLKQKQLKKGLEQLAEEGA-VQVFKPLDGNDLILGAVGQLQFEVVQARLKN 454 (528)
T ss_pred EECCC-CEEEECCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCE-EEEECCCCCCCCEEEEECCHHHHHHHHHHHH
T ss_conf 63158-556536899879999998861786888999999999865575-6996037788865874100137999999876
Q ss_pred HCCCCCEECCCCCCC
Q ss_conf 111332010541011
Q gi|254780264|r 473 EFKVDANVGAPYVSY 487 (701)
Q Consensus 473 ~f~iei~vs~P~V~y 487 (701)
T Consensus 455 EY~ve~~~e~~~~~~ 469 (528)
T COG4108 455 EYNVEAVFEPVNFST 469 (528)
T ss_pred HHCCEEEEEECCCEE
T ss_conf 518707874055148