HHsearch alignment for GI: 254780264 and conserved domain: KOG0090

Probab=97.95  E-value=5.1e-05  Score=50.93  Aligned_cols=118  Identities=19%  Similarity=0.311  Sum_probs=78.2

Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCC
Q ss_conf             27999868788977899999998087321422017956137808898708537640799996077787138999817987
Q gi|254780264|r   11 RNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGH   90 (701)
Q Consensus        11 RNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH   90 (701)
T Consensus        39 ~~Vll~Gl~dSGKT~LF~qL~~--g--s~------~~Tvt-----------Siepn~a~~r~gs-----~~~~LVD~PGH   92 (238)
T KOG0090          39 NAVLLVGLSDSGKTSLFTQLIT--G--SH------RGTVT-----------SIEPNEATYRLGS-----ENVTLVDLPGH   92 (238)
T ss_pred             CCEEEEECCCCCCEEEEEEHHC--C--CC------CCEEE-----------EECCCEEEEEECC-----CCEEEEECCCC
T ss_conf             8689993278983355420013--8--73------67032-----------1046613576368-----62388757995


Q ss_pred             CCCHHHHHHHHH---HHCEEEEEEECCCCC---CHHHHHHHHHH-----HHCCCCEEEEECCCCCCCCCHHHHHH
Q ss_conf             552899999998---604569999558888---83479999999-----87399789998176765875555666
Q gi|254780264|r   91 VDFTMEVERSIR---VTDGAIALLDSNAGV---EPQTETVWRQA-----DKYSVPRVIFCNKMDKMGADFYRSVE  154 (701)
Q Consensus        91 ~DF~~Ev~~aL~---~~DgailvVDa~eGv---~~qT~~vlr~~-----~~~~lp~ilvINKiDr~~~d~~~~l~  154 (701)
T Consensus        93 ~rlR~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir  167 (238)
T KOG0090          93 SRLRRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIR  167 (238)
T ss_pred             HHHHHHHHHHCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHCCCHHHHH
T ss_conf             889999998734655221599998332246006799999999998601234799889995552232138599999