HHsearch alignment for GI: 254780264 and conserved domain: PRK00741
>PRK00741 prfC peptide chain release factor 3; Provisional.
Probab=100.00 E-value=0 Score=829.16 Aligned_cols=456 Identities=27% Similarity=0.419 Sum_probs=390.0
Q ss_pred CCHHHEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEE----CCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCE
Q ss_conf 671025279998687889778999999980873214220----1795613780889870853764079999607778713
Q gi|254780264|r 5 CKIEDSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEV----HDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQK 80 (701)
Q Consensus 5 ~~~e~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v----~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~ 80 (701)
T Consensus 5 ~ei~~~RniaIi~H~dAGKTTLtE~lL~~~GaI~~~G~V~~~~~~~~~~sD~~~~E~~RgiSI~ssv~~~e~~-----~~ 79 (526)
T PRK00741 5 QEVAKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYR-----DC 79 (526)
T ss_pred HHHHCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCHHHHHCCCEEECCEEEEEEC-----CE
T ss_conf 6876117799993789898999999997467524484663146788646788588997596486151778678-----98
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCC
Q ss_conf 89998179875528999999986045699995588888347999999987399789998176765875555666411110
Q gi|254780264|r 81 KLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKMGADFYRSVEMISSRL 160 (701)
Q Consensus 81 ~iNlIDTPGH~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~~~d~~~~l~~i~~~l 160 (701)
T Consensus 80 ~iNliDTPGh~DF~~e~~raL~a~D~Av~Vida~~GVe~qTe~~w~~~~~~~iP~i~FINKmDR~~ad~~~~l~ei~~~l 159 (526)
T PRK00741 80 LINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDGREPLELLDEIEEVL 159 (526)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf 99999098946778999999987375999997775523336899999886399889999656767898789887788874
Q ss_pred CCCCCEECCCCCCCCCCCEEEEEHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 26833000234555665302442234431145222698513874004317889999998863002345789998632778
Q gi|254780264|r 161 GANPLVIQLPVGSESNFQGVIDLVEMKALLWKNEDLGSSWDVVEIPEDMKDSANSYRDKMIESIVELDDSAMDSYLQGES 240 (701)
Q Consensus 161 ~~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lle~i~~~dd~~~~~~l~~~~ 240 (701)
T Consensus 160 g~~~~p~~~Pig~g~~F~GvvDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-------~~~~~~~~ee~e 229 (526)
T PRK00741 160 GIACAPITWPIGMGKRFKGVYDLYNDEVELYQPGHGHTIQEFEIIKGLDNPEL---DEALG-------EDLAEQLREELE 229 (526)
T ss_pred CCCCEEEEEECCCCCCEEEEEEECCCEEEECCCCCCCCEEEEECCCCCCCHHH---HHHHH-------HHHHHHHHHHHH
T ss_conf 78736888303678860378880138799803677884046605877877899---98753-------899997553577
Q ss_pred CCHHHHHHHHCCEEECCEEEECCCCCEECCCCHHHHHHHHHHHCCCHHHEECCCCCCCCCCCCCCCCCCCCCCCCEECCC
Q ss_conf 99889873000003101003234310001221024889898717862130001222245675210112345654201033
Q gi|254780264|r 241 FSSDRIRSLIRLGTISVKFFPVLCGSSFKNKGVQPLLDAVVDYLPSPLDVRAIKGVDVKSNSEIDVSAVDSSPLSMLAFK 320 (701)
Q Consensus 241 ~~~~~l~~~l~~~~~~~~~~pv~~gsa~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~v~K 320 (701)
T Consensus 230 l~~~~~~~~d~~~~~~G~l~PVf~GSA~~n~GV~~LLd~iv~~~PsP~~r~~~~~---------~v~-p~~~~fsa~VFK 299 (526)
T PRK00741 230 LVQGASNEFDLEAFLAGELTPVFFGSALNNFGVQEFLDAFVEWAPAPQPRQTDER---------VVE-PTEEKFSGFVFK 299 (526)
T ss_pred HHHCCCCCCCHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCC---------CCC-CCCCCCCEEEEE
T ss_conf 7731555106899973980289962000365699999999997799877777765---------447-877774359999
Q ss_pred CCC--CC-CCCCEEHHHHHCCCCCCCCEEEEECCCCCCEEHHHHHHHCCCEEEEEECCCCCEEEECCCCCCCCCCCCCCC
Q ss_conf 211--65-467100001101334568368983265541110453210474454200356732641387444321101277
Q gi|254780264|r 321 VMA--DS-FVGSLTFCRIYSGKISKGDSLLNTVKGKKERVGRMLQMHSNSREDIDEAYCGDIIALAGLKETTTGDTLCDP 397 (701)
Q Consensus 321 ~~~--d~-~~G~~a~~RV~SGtL~~gd~i~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~I~Gl~~~~~gdTl~~~ 397 (701)
T Consensus 300 iqanmDP~h~griaf~RV~SG~l~~g~~v~n~r~gk~eri~~l~~~~g~~r~~V~ea~AGDIvgl~~~~~~~tGDTL~~~ 379 (526)
T PRK00741 300 IQANMDPKHRDRIAFMRVCSGKFEKGMKVRHVRTGKDVRISNALTFMAQDREHVEEAYAGDIIGLHNHGTIQIGDTFTEG 379 (526)
T ss_pred EEECCCCCCCCEEEEEEEEEEEECCCCEEEECCCCCEEEHHHHHHHHCCCCEEEEEECCCCEEEECCCCCCCCCCEECCC
T ss_conf 98403754254379999751188579989852579536632677874435235138769989997166630037552068
Q ss_pred CCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEECCHHHHHHHHHHHHHHCCCC
Q ss_conf 88410156636652135777615643220257888854102742014450457546876066478999999987411133
Q gi|254780264|r 398 SRPIVLERMDFPEPVIQIAIEPKSKGDQERMSLALSRLVAEDPSLRVSMDPNSGQTNLSGMGELHLEIIVDRMLREFKVD 477 (701)
Q Consensus 398 ~~~~~~~~~~~~~Pvv~vaIep~~~~d~~kL~~~L~~L~~~Dp~l~v~~~~etGE~il~g~GElhLev~l~~L~~~f~ie 477 (701)
T Consensus 380 ~-~l~~~~Ip~f~P~~~~~v~~~~~~~~kkl~~gL~~L~EEd~~-~v~~~~~t~e~il~gmGeLHlEVv~~RLk~eygVe 457 (526)
T PRK00741 380 E-KLKFTGIPNFAPELFRRVRLKNPLKQKQLQKGLVQLSEEGAV-QVFRPLSNNDLILGAVGQLQFEVVAHRLKNEYNVE 457 (526)
T ss_pred C-CCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHCCCCCE-EEEECCCCCCEEEEEECHHHHHHHHHHHHHHHCCE
T ss_conf 8-521068899997557998879888899999999985547866-98873889988999716889999999998873972
Q ss_pred CEECCCCCCC
Q ss_conf 2010541011
Q gi|254780264|r 478 ANVGAPYVSY 487 (701)
Q Consensus 478 i~vs~P~V~y 487 (701)
T Consensus 458 v~~e~~~~~~ 467 (526)
T PRK00741 458 AIYEPVGVAT 467 (526)
T ss_pred EEECCCCEEE
T ss_conf 8971574379