HHsearch alignment for GI: 254780264 and conserved domain: TIGR00483

>TIGR00483 EF-1_alpha translation elongation factor EF-1, subunit alpha; InterPro: IPR004539 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome , , . EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding , . EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). This entry represents EF1A proteins found primarily in eukaryotic (eEF1A) and archaeal (aEF1A) organisms, these proteins being more closely related to one another than to EF1A (or EF-Tu) found in bacteria (IPR004541 from INTERPRO). More information about these proteins can be found at Protein of the Month: Elongation Factors . ; GO: 0003746 translation elongation factor activity, 0005525 GTP binding, 0006414 translational elongation, 0005737 cytoplasm.
Probab=100.00  E-value=4.2e-36  Score=250.57  Aligned_cols=368  Identities=27%  Similarity=0.407  Sum_probs=236.2

Q ss_pred             CCCCCCHHHEEEEEEECCCCCCHHHHHHHHHHHCCCCCCC--CE-----ECCC-C-----EECCCHHHHHHHCCCEEEEE
Q ss_conf             9865671025279998687889778999999980873214--22-----0179-5-----61378088987085376407
Q gi|254780264|r    1 MARKCKIEDSRNFGIMAHIDAGKTTTTERILYYAGKSHKI--GE-----VHDG-S-----ATMDWMEQEQERGITITSAS   67 (701)
Q Consensus         1 m~~~~~~e~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~--g~-----v~~g-~-----~~~D~~~~E~eRgITi~ss~   67 (701)
T Consensus         1 MaKeK---~~~Nv~~IGHVD~GKST~~G~Lly~~G~I~~~~~eK~~kEa~e~GK~~F~fa~V~D~Lk~ERERGvTID~A~   77 (445)
T TIGR00483         1 MAKEK---EHINVAFIGHVDHGKSTLVGRLLYKAGAIDEQLLEKLKKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAH   77 (445)
T ss_pred             CCCCC---CEEEEEEEEEEECCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHH
T ss_conf             97654---324489982540885026677775428965899999987575518730367654311000001562243344


Q ss_pred             EEEEECCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCEEEEEEECCCC-------CCHHHHHHHHHHHHCCCCEEEE-E
Q ss_conf             9999607778713899981798755289999999860456999955888-------8834799999998739978999-8
Q gi|254780264|r   68 TTVFWPGRDGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAG-------VEPQTETVWRQADKYSVPRVIF-C  139 (701)
Q Consensus        68 ~sl~~~~~~~~~~~iNlIDTPGH~DF~~Ev~~aL~~~DgailvVDa~eG-------v~~qT~~vlr~~~~~~lp~ilv-I  139 (701)
T Consensus        78 ~KFeT-----~KY~~TivDcPGHRDFiKNMITGaSQADaAvLv~~v~~~~~~ag~~~~pQTrEH~~La~TLGi~QliVAi  152 (445)
T TIGR00483        78 KKFET-----DKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVDDGEFEAGISVQPQTREHVFLARTLGINQLIVAI  152 (445)
T ss_pred             HHCCC-----CCEEEEEEECCCCCHHHHHCCCCCCCCCEEEEEEECCCCCCCCCEEECCCCHHHHHHHHHHCCEEEEEEE
T ss_conf             54178-----8516999846987013431126675124279999525441024012178605778887750320453331


Q ss_pred             CCCCCCCCC---HHHHHHHHCC----CCCCCCCEE-CCCCCCCCCCCEEEEEHHHHHHCCCCCCCCCCCEEEEECHHHHH
Q ss_conf             176765875---5556664111----102683300-02345556653024422344311452226985138740043178
Q gi|254780264|r  140 NKMDKMGAD---FYRSVEMISS----RLGANPLVI-QLPVGSESNFQGVIDLVEMKALLWKNEDLGSSWDVVEIPEDMKD  211 (701)
Q Consensus       140 NKiDr~~~d---~~~~l~~i~~----~l~~~~~~~-~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (701)
T Consensus       153 NKMD~V~yd~~~f~~~~~~~s~~l~K~vGY~p~~v~FiP~s~---~~G--DN~~~~-------s~~~PW-----------  209 (445)
T TIGR00483       153 NKMDSVNYDEEEFEALKKEVSEQLLKKVGYKPDEVPFIPISA---FEG--DNVIKK-------SENTPW-----------  209 (445)
T ss_pred             CCCCCEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECC---CCC--CCHHHH-------HCCCCC-----------
T ss_conf             024610027789999999999989987488756123254035---467--613433-------038885-----------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCEEECCEEEECCCCCEECCCCHHHHHHHHHHHCCCHHHEE
Q ss_conf             89999998863002345789998632778998898730000031010032343100012210248898987178621300
Q gi|254780264|r  212 SANSYRDKMIESIVELDDSAMDSYLQGESFSSDRIRSLIRLGTISVKFFPVLCGSSFKNKGVQPLLDAVVDYLPSPLDVR  291 (701)
Q Consensus       212 ~~~~~~~~lle~i~~~dd~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~pv~~gsa~~~~Gv~~LLd~i~~~lPsP~~~~  291 (701)
T Consensus       210 -------------Yk----gw----------e~e~----~agvv~---------------G-~TL~EA~D~~~-~P~---  238 (445)
T TIGR00483       210 -------------YK----GW----------EKET----KAGVVK---------------G-KTLLEALDALE-PPE---  238 (445)
T ss_pred             -------------CC----CC----------CCCC----CCEEEC---------------C-CHHHHHHHHHC-CCC---
T ss_conf             -------------25----52----------2000----230221---------------8-45898873104-786---


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCEEHHHHHCCCCCCCCEEEEECCCCCCEEHHHHHHHCCCEEEE
Q ss_conf             01222245675210112345654201033211654671000011013345683689832655411104532104744542
Q gi|254780264|r  292 AIKGVDVKSNSEIDVSAVDSSPLSMLAFKVMADSFVGSLTFCRIYSGKISKGDSLLNTVKGKKERVGRMLQMHSNSREDI  371 (701)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~pl~~~v~K~~~d~~~G~~a~~RV~SGtL~~gd~i~~~~~~~~~kV~~l~~~~g~~~~~v  371 (701)
T Consensus       239 ----------------kp~d~PLRiPiQDVY~I~GvGTVPVGRVEtGvl~~G~~V~F~PAGVsgEVKSi-EMH---HE~i  298 (445)
T TIGR00483       239 ----------------KPVDKPLRIPIQDVYSITGVGTVPVGRVETGVLKPGDKVVFEPAGVSGEVKSI-EMH---HEQI  298 (445)
T ss_pred             ----------------CCCCCCCCCCCCCEEEECCEEECCCCCEECCEEECCCEEEECCCCCCCCEEEE-EEC---CCCC
T ss_conf             ----------------43467730553003575336622346020242644887896378843121367-611---3436


Q ss_pred             EECCCCCEEE--ECC--CCCCCCCCCCCCCCC-CCCCCCCCCC--------CCEEEEEEEECCCCCCHHHHHH-HHHHHC
Q ss_conf             0035673264--138--744432110127788-4101566366--------5213577761564322025788-885410
Q gi|254780264|r  372 DEAYCGDIIA--LAG--LKETTTGDTLCDPSR-PIVLERMDFP--------EPVIQIAIEPKSKGDQERMSLA-LSRLVA  437 (701)
Q Consensus       372 ~~a~aGdIv~--I~G--l~~~~~gdTl~~~~~-~~~~~~~~~~--------~Pvv~vaIep~~~~d~~kL~~~-L~~L~~  437 (701)
T Consensus       299 ~~a~PGDNiGFNVrgVs~kdIrRGdV~G~~~NdPP~-v~~~F~A~~vVL~HP~~ItvGYtPV~~~HTA~~AC~F~EL~~K  377 (445)
T TIGR00483       299 EQAEPGDNIGFNVRGVSKKDIRRGDVAGHPDNDPPK-VAKEFTAQIVVLQHPGAITVGYTPVLHAHTAQIACRFVELLKK  377 (445)
T ss_pred             CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             677778741220015560220014303788875872-1014412799972897677356563014311333316888855


Q ss_pred             CCCCEEEEEECCCCEEEEEECCHHHHHHHHHHHHHHCCCCCEECCCCCC
Q ss_conf             2742014450457546876066478999999987411133201054101
Q gi|254780264|r  438 EDPSLRVSMDPNSGQTNLSGMGELHLEIIVDRMLREFKVDANVGAPYVS  486 (701)
Q Consensus       438 ~Dp~l~v~~~~etGE~il~g~GElhLev~l~~L~~~f~iei~vs~P~V~  486 (701)
T Consensus       378 ~d~rtG~-~~Ee~P~FLKtGdA--------------A~VK~~PtkP~vi  411 (445)
T TIGR00483       378 LDPRTGQ-VLEENPQFLKTGDA--------------AIVKLKPTKPMVI  411 (445)
T ss_pred             CCCCCCC-CCCCCCCCCCCCCE--------------EEEEEECCCCEEE
T ss_conf             0733585-01478751246763--------------6899618997487