HHsearch alignment for GI: 254780264 and conserved domain: TIGR00483
>TIGR00483 EF-1_alpha translation elongation factor EF-1, subunit alpha; InterPro: IPR004539 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome , , . EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding , . EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). This entry represents EF1A proteins found primarily in eukaryotic (eEF1A) and archaeal (aEF1A) organisms, these proteins being more closely related to one another than to EF1A (or EF-Tu) found in bacteria (IPR004541 from INTERPRO). More information about these proteins can be found at Protein of the Month: Elongation Factors . ; GO: 0003746 translation elongation factor activity, 0005525 GTP binding, 0006414 translational elongation, 0005737 cytoplasm.
Probab=100.00 E-value=4.2e-36 Score=250.57 Aligned_cols=368 Identities=27% Similarity=0.407 Sum_probs=236.2
Q ss_pred CCCCCCHHHEEEEEEECCCCCCHHHHHHHHHHHCCCCCCC--CE-----ECCC-C-----EECCCHHHHHHHCCCEEEEE
Q ss_conf 9865671025279998687889778999999980873214--22-----0179-5-----61378088987085376407
Q gi|254780264|r 1 MARKCKIEDSRNFGIMAHIDAGKTTTTERILYYAGKSHKI--GE-----VHDG-S-----ATMDWMEQEQERGITITSAS 67 (701)
Q Consensus 1 m~~~~~~e~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~--g~-----v~~g-~-----~~~D~~~~E~eRgITi~ss~ 67 (701)
T Consensus 1 MaKeK---~~~Nv~~IGHVD~GKST~~G~Lly~~G~I~~~~~eK~~kEa~e~GK~~F~fa~V~D~Lk~ERERGvTID~A~ 77 (445)
T TIGR00483 1 MAKEK---EHINVAFIGHVDHGKSTLVGRLLYKAGAIDEQLLEKLKKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAH 77 (445)
T ss_pred CCCCC---CEEEEEEEEEEECCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHH
T ss_conf 97654---324489982540885026677775428965899999987575518730367654311000001562243344
Q ss_pred EEEEECCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCEEEEEEECCCC-------CCHHHHHHHHHHHHCCCCEEEE-E
Q ss_conf 9999607778713899981798755289999999860456999955888-------8834799999998739978999-8
Q gi|254780264|r 68 TTVFWPGRDGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAG-------VEPQTETVWRQADKYSVPRVIF-C 139 (701)
Q Consensus 68 ~sl~~~~~~~~~~~iNlIDTPGH~DF~~Ev~~aL~~~DgailvVDa~eG-------v~~qT~~vlr~~~~~~lp~ilv-I 139 (701)
T Consensus 78 ~KFeT-----~KY~~TivDcPGHRDFiKNMITGaSQADaAvLv~~v~~~~~~ag~~~~pQTrEH~~La~TLGi~QliVAi 152 (445)
T TIGR00483 78 KKFET-----DKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVDDGEFEAGISVQPQTREHVFLARTLGINQLIVAI 152 (445)
T ss_pred HHCCC-----CCEEEEEEECCCCCHHHHHCCCCCCCCCEEEEEEECCCCCCCCCEEECCCCHHHHHHHHHHCCEEEEEEE
T ss_conf 54178-----8516999846987013431126675124279999525441024012178605778887750320453331
Q ss_pred CCCCCCCCC---HHHHHHHHCC----CCCCCCCEE-CCCCCCCCCCCEEEEEHHHHHHCCCCCCCCCCCEEEEECHHHHH
Q ss_conf 176765875---5556664111----102683300-02345556653024422344311452226985138740043178
Q gi|254780264|r 140 NKMDKMGAD---FYRSVEMISS----RLGANPLVI-QLPVGSESNFQGVIDLVEMKALLWKNEDLGSSWDVVEIPEDMKD 211 (701)
Q Consensus 140 NKiDr~~~d---~~~~l~~i~~----~l~~~~~~~-~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (701)
T Consensus 153 NKMD~V~yd~~~f~~~~~~~s~~l~K~vGY~p~~v~FiP~s~---~~G--DN~~~~-------s~~~PW----------- 209 (445)
T TIGR00483 153 NKMDSVNYDEEEFEALKKEVSEQLLKKVGYKPDEVPFIPISA---FEG--DNVIKK-------SENTPW----------- 209 (445)
T ss_pred CCCCCEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECC---CCC--CCHHHH-------HCCCCC-----------
T ss_conf 024610027789999999999989987488756123254035---467--613433-------038885-----------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCEEECCEEEECCCCCEECCCCHHHHHHHHHHHCCCHHHEE
Q ss_conf 89999998863002345789998632778998898730000031010032343100012210248898987178621300
Q gi|254780264|r 212 SANSYRDKMIESIVELDDSAMDSYLQGESFSSDRIRSLIRLGTISVKFFPVLCGSSFKNKGVQPLLDAVVDYLPSPLDVR 291 (701)
Q Consensus 212 ~~~~~~~~lle~i~~~dd~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~pv~~gsa~~~~Gv~~LLd~i~~~lPsP~~~~ 291 (701)
T Consensus 210 -------------Yk----gw----------e~e~----~agvv~---------------G-~TL~EA~D~~~-~P~--- 238 (445)
T TIGR00483 210 -------------YK----GW----------EKET----KAGVVK---------------G-KTLLEALDALE-PPE--- 238 (445)
T ss_pred -------------CC----CC----------CCCC----CCEEEC---------------C-CHHHHHHHHHC-CCC---
T ss_conf -------------25----52----------2000----230221---------------8-45898873104-786---
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCEEHHHHHCCCCCCCCEEEEECCCCCCEEHHHHHHHCCCEEEE
Q ss_conf 01222245675210112345654201033211654671000011013345683689832655411104532104744542
Q gi|254780264|r 292 AIKGVDVKSNSEIDVSAVDSSPLSMLAFKVMADSFVGSLTFCRIYSGKISKGDSLLNTVKGKKERVGRMLQMHSNSREDI 371 (701)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~pl~~~v~K~~~d~~~G~~a~~RV~SGtL~~gd~i~~~~~~~~~kV~~l~~~~g~~~~~v 371 (701)
T Consensus 239 ----------------kp~d~PLRiPiQDVY~I~GvGTVPVGRVEtGvl~~G~~V~F~PAGVsgEVKSi-EMH---HE~i 298 (445)
T TIGR00483 239 ----------------KPVDKPLRIPIQDVYSITGVGTVPVGRVETGVLKPGDKVVFEPAGVSGEVKSI-EMH---HEQI 298 (445)
T ss_pred ----------------CCCCCCCCCCCCCEEEECCEEECCCCCEECCEEECCCEEEECCCCCCCCEEEE-EEC---CCCC
T ss_conf ----------------43467730553003575336622346020242644887896378843121367-611---3436
Q ss_pred EECCCCCEEE--ECC--CCCCCCCCCCCCCCC-CCCCCCCCCC--------CCEEEEEEEECCCCCCHHHHHH-HHHHHC
Q ss_conf 0035673264--138--744432110127788-4101566366--------5213577761564322025788-885410
Q gi|254780264|r 372 DEAYCGDIIA--LAG--LKETTTGDTLCDPSR-PIVLERMDFP--------EPVIQIAIEPKSKGDQERMSLA-LSRLVA 437 (701)
Q Consensus 372 ~~a~aGdIv~--I~G--l~~~~~gdTl~~~~~-~~~~~~~~~~--------~Pvv~vaIep~~~~d~~kL~~~-L~~L~~ 437 (701)
T Consensus 299 ~~a~PGDNiGFNVrgVs~kdIrRGdV~G~~~NdPP~-v~~~F~A~~vVL~HP~~ItvGYtPV~~~HTA~~AC~F~EL~~K 377 (445)
T TIGR00483 299 EQAEPGDNIGFNVRGVSKKDIRRGDVAGHPDNDPPK-VAKEFTAQIVVLQHPGAITVGYTPVLHAHTAQIACRFVELLKK 377 (445)
T ss_pred CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 677778741220015560220014303788875872-1014412799972897677356563014311333316888855
Q ss_pred CCCCEEEEEECCCCEEEEEECCHHHHHHHHHHHHHHCCCCCEECCCCCC
Q ss_conf 2742014450457546876066478999999987411133201054101
Q gi|254780264|r 438 EDPSLRVSMDPNSGQTNLSGMGELHLEIIVDRMLREFKVDANVGAPYVS 486 (701)
Q Consensus 438 ~Dp~l~v~~~~etGE~il~g~GElhLev~l~~L~~~f~iei~vs~P~V~ 486 (701)
T Consensus 378 ~d~rtG~-~~Ee~P~FLKtGdA--------------A~VK~~PtkP~vi 411 (445)
T TIGR00483 378 LDPRTGQ-VLEENPQFLKTGDA--------------AIVKLKPTKPMVI 411 (445)
T ss_pred CCCCCCC-CCCCCCCCCCCCCE--------------EEEEEECCCCEEE
T ss_conf 0733585-01478751246763--------------6899618997487