HHsearch alignment for GI: 254780264 and conserved domain: cd00876

>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=98.86  E-value=7.9e-08  Score=68.98  Aligned_cols=109  Identities=25%  Similarity=0.250  Sum_probs=73.6

Q ss_pred             EEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEE-EEEEEEECCCCCCCEEEEEEECCCCC
Q ss_conf             99986878897789999999808732142201795613780889870853764-07999960777871389998179875
Q gi|254780264|r   13 FGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITS-ASTTVFWPGRDGGQKKLTIIDTPGHV   91 (701)
Q Consensus        13 v~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~s-s~~sl~~~~~~~~~~~iNlIDTPGH~   91 (701)
T Consensus         2 i~ivG~~~vGKTsli~r~~~~--~f~~--~------~~p----------Ti~~~~~~~~~~---~~~~~~l~i~Dt~g~~   58 (160)
T cd00876           2 VVVLGAGGVGKSAITIQFVKG--TFVE--E------YDP----------TIEDSYRKTIVV---DGETYTLDILDTAGQE   58 (160)
T ss_pred             EEEECCCCCCHHHHHHHHHHC--CCCC--C------CCC----------CEEEEEEEEEEE---CCEEEEEEEEECCCCH
T ss_conf             999996996799999999619--5998--7------788----------300489999997---6699999999799962


Q ss_pred             CCHHHHHHHHHHHCEEEEEEECCCCCCHHHH-HHHHHH----HHCCCCEEEEECCCCC
Q ss_conf             5289999999860456999955888883479-999999----8739978999817676
Q gi|254780264|r   92 DFTMEVERSIRVTDGAIALLDSNAGVEPQTE-TVWRQA----DKYSVPRVIFCNKMDK  144 (701)
Q Consensus        92 DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~-~vlr~~----~~~~lp~ilvINKiDr  144 (701)
T Consensus        59 ~~~~~~~~~~~~a~~~ilvfd~~~~~Sf~~i~~~~~~i~~~~~~~~~piilvgnK~Dl  116 (160)
T cd00876          59 EFSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDL  116 (160)
T ss_pred             HHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCC
T ss_conf             3557889997643689997328987899999999999999728788629999974562