HHsearch alignment for GI: 254780264 and conserved domain: cd01870
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=98.56 E-value=8e-07 Score=62.55 Aligned_cols=111 Identities=20% Similarity=0.186 Sum_probs=74.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEE-EEEEEECCCCCCCEEEEEEECCC
Q ss_conf 27999868788977899999998087321422017956137808898708537640-79999607778713899981798
Q gi|254780264|r 11 RNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSA-STTVFWPGRDGGQKKLTIIDTPG 89 (701)
Q Consensus 11 RNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss-~~sl~~~~~~~~~~~iNlIDTPG 89 (701)
T Consensus 2 ~Ki~liGd~~VGKTsli~r~~~--~~F~~--------~y~----------pTi~~~~~~~i~~---~~~~v~l~iwDtaG 58 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSK--DQFPE--------VYV----------PTVFENYVADIEV---DGKQVELALWDTAG 58 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHC--CCCCC--------CCC----------CCEEEEEEEEEEE---CCEEEEEEEEECCC
T ss_conf 0999999899669999999970--98999--------847----------8436899999999---99999999997776
Q ss_pred CCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHH-HHH-HHHH--HCCCCEEEEECCCCC
Q ss_conf 755289999999860456999955888883479-999-9998--739978999817676
Q gi|254780264|r 90 HVDFTMEVERSIRVTDGAIALLDSNAGVEPQTE-TVW-RQAD--KYSVPRVIFCNKMDK 144 (701)
Q Consensus 90 H~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~-~vl-r~~~--~~~lp~ilvINKiDr 144 (701)
T Consensus 59 ~e~~~~~~~~~~~~a~~~ilvydi~~~~Sf~~~~~~w~~~i~~~~~~~piilVgnK~DL 117 (175)
T cd01870 59 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDL 117 (175)
T ss_pred CCCCCCCHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 61323240443148878999986598799999999999999972989989999872433