HHsearch alignment for GI: 254780264 and conserved domain: cd01873
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=97.37 E-value=0.0032 Score=39.40 Aligned_cols=121 Identities=16% Similarity=0.080 Sum_probs=65.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEC---CCCEE-CCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEEC
Q ss_conf 799986878897789999999808732142201---79561-37808898708537640799996077787138999817
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVH---DGSAT-MDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDT 87 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~---~g~~~-~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDT 87 (701)
T Consensus 4 KiVlvGDs~VGKTsLl~~~~~--n~~~~~~~~~~~~~pTv~~~~~--------~~~~~~~~~~~~~~vdg~~v~L~iWDT 73 (195)
T cd01873 4 KCVVVGDNAVGKTRLICARAC--NKTLTQYQLLATHVPTVWAIDQ--------YRVCQEVLERSRDVVDGVSVSLRLWDT 73 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHH--CCCCCCCCCCCCCCCCCCCCCC--------CEEEEEECCCCEEEECCEEEEEEEEEC
T ss_conf 999987899898999977874--7876556566675886633333--------134444302211421895999999978
Q ss_pred CCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHH-HHHHHHHH---HCCCCEEEEECCCCC
Q ss_conf 9875528999999986045699995588888347-99999998---739978999817676
Q gi|254780264|r 88 PGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQT-ETVWRQAD---KYSVPRVIFCNKMDK 144 (701)
Q Consensus 88 PGH~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT-~~vlr~~~---~~~lp~ilvINKiDr 144 (701)
T Consensus 74 AG~~~~~r--~~~y~~~~~~ll~fdv~~~~Sf~~v~~~W~~ei~~~~~~~piiLVG~K~DL 132 (195)
T cd01873 74 FGDHDKDR--RFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDL 132 (195)
T ss_pred CCCHHHCC--CCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHH
T ss_conf 99620012--143568889999996698014899999999999986899988999637575