HHsearch alignment for GI: 254780264 and conserved domain: cd01878
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.34 E-value=7.1e-11 Score=88.57 Aligned_cols=114 Identities=19% Similarity=0.275 Sum_probs=70.2
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCC
Q ss_conf 52799986878897789999999808732142201795613780889870853764079999607778713899981798
Q gi|254780264|r 10 SRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPG 89 (701)
Q Consensus 10 iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPG 89 (701)
T Consensus 41 ~p~VaivG~PNvGKSTLlN~L~---g~~~~v~~-~~~-tT~d~-------------~~~~i~~~----~~~~i~l~DT~G 98 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNALT---GADVYAED-QLF-ATLDP-------------TTRRLRLP----DGREVLLTDTVG 98 (204)
T ss_pred CCEEEEECCCCCCHHHHHHHHH---CCCCEEEC-CCC-CCCCC-------------EEEEEEEC----CCCEEEEEECCC
T ss_conf 9879998899998999999994---89963415-677-64576-------------36689956----997799983686
Q ss_pred C-CCCHHHHH-------HHHHHHCEEEEEEECCCCCC-HH---HHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 7-55289999-------99986045699995588888-34---7999999987399789998176765
Q gi|254780264|r 90 H-VDFTMEVE-------RSIRVTDGAIALLDSNAGVE-PQ---TETVWRQADKYSVPRVIFCNKMDKM 145 (701)
Q Consensus 90 H-~DF~~Ev~-------~aL~~~DgailvVDa~eGv~-~q---T~~vlr~~~~~~lp~ilvINKiDr~ 145 (701)
T Consensus 99 ~i~~~p~~lie~~~~tle~i~~AD~il~vvD~s~~~~~~~~~~~~~~l~~l~~~~k~~i~V~NKiDl~ 166 (204)
T cd01878 99 FIRDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLL 166 (204)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCC
T ss_conf 44678378999999999999739899999979985366779999999998065557607888670479