HHsearch alignment for GI: 254780264 and conserved domain: cd01884
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=100.00 E-value=5e-44 Score=301.41 Aligned_cols=129 Identities=30% Similarity=0.420 Sum_probs=113.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCC
Q ss_conf 27999868788977899999998087321422017956137808898708537640799996077787138999817987
Q gi|254780264|r 11 RNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGH 90 (701)
Q Consensus 11 RNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH 90 (701)
T Consensus 3 ~Ni~iiGHVDhGKTTL~~~l~~~~~~~~~--~~~~~~~~~D~~~~EreRGiTI~~~~~~~~~~-----~~~~~~IDtPGH 75 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGG--AKFKKYDEIDKAPEEKARGITINTAHVEYETA-----NRHYAHVDCPGH 75 (195)
T ss_pred EEEEEEEECCCCHHHHHHHHHHHHHHHCC--CCCCCCHHCCCCHHHHCCCCCCCCEEEEEECC-----CEEEEECCCCCH
T ss_conf 79999960588698999999998866344--44112001005466650588614418999608-----816996268960
Q ss_pred CCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEE-EECCCCCCC
Q ss_conf 55289999999860456999955888883479999999873997899-981767658
Q gi|254780264|r 91 VDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVI-FCNKMDKMG 146 (701)
Q Consensus 91 ~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~il-vINKiDr~~ 146 (701)
T Consensus 76 ~dF~~~~i~g~~~~D~aiLVVdA~eGv~~QT~eh~~la~~lgi~~iiV~iNK~D~~~ 132 (195)
T cd01884 76 ADYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVD 132 (195)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 778889986351136268998527787478999999999809996279996877898