HHsearch alignment for GI: 254780264 and conserved domain: cd01888
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=100.00 E-value=4.5e-35 Score=243.96 Aligned_cols=119 Identities=25% Similarity=0.375 Sum_probs=97.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEE--------------CCCC-
Q ss_conf 7999868788977899999998087321422017956137808898708537640799996--------------0777-
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFW--------------PGRD- 76 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~--------------~~~~- 76 (701)
T Consensus 2 Ni~iiGHVDhGKSTLi~~L~---g------------~~~~~~~~e~er~it~klg~a~~~~~~~~~~~~~~~~~~~~~~~ 66 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALS---G------------VWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKED 66 (203)
T ss_pred EEEEEEEECCCHHHHHHHHH---C------------CCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHCCCC
T ss_conf 69999885787999999970---8------------51244078886776031114566665111212231011110124
Q ss_pred -------------CCCEEEEEEECCCCCCCHHHHHHHHHHHCEEEEEEECCCCC-CHHHHHHHHHHHHCCCC-EEEEECC
Q ss_conf -------------87138999817987552899999998604569999558888-83479999999873997-8999817
Q gi|254780264|r 77 -------------GGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGV-EPQTETVWRQADKYSVP-RVIFCNK 141 (701)
Q Consensus 77 -------------~~~~~iNlIDTPGH~DF~~Ev~~aL~~~DgailvVDa~eGv-~~qT~~vlr~~~~~~lp-~ilvINK 141 (701)
T Consensus 67 ~~~~~~~~~~~~~~~~r~~tiiD~PGH~df~~nmi~Gas~aD~aiLvVdA~eG~~~~QT~eH~~l~~~lgv~~iIV~vNK 146 (203)
T cd01888 67 SPECECPGCGGETKLVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNK 146 (203)
T ss_pred CCEEEECCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 42145314565431124799986898799999999766434766898643667750779999999998499863677507
Q ss_pred CCCC
Q ss_conf 6765
Q gi|254780264|r 142 MDKM 145 (701)
Q Consensus 142 iDr~ 145 (701)
T Consensus 147 mDlv 150 (203)
T cd01888 147 IDLV 150 (203)
T ss_pred CCCC
T ss_conf 7778