HHsearch alignment for GI: 254780264 and conserved domain: cd04104

>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.12  E-value=5.9e-05  Score=50.55  Aligned_cols=115  Identities=17%  Similarity=0.201  Sum_probs=72.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCC-
Q ss_conf             7999868788977899999998087321422017956137808898708537640799996077787138999817987-
Q gi|254780264|r   12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGH-   90 (701)
Q Consensus        12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH-   90 (701)
T Consensus         3 ~iaVtGesGaGKSSfINAlR---Gl----~~~d~~aA~t---------Gv~-eTT~~~~~Y~~p~~p--nv~lwDlPG~G   63 (197)
T cd04104           3 NIAVTGESGAGKSSFINALR---GV----GHEEEGAAPT---------GVV-ETTMKRTPYPHPKFP--NVTLWDLPGIG   63 (197)
T ss_pred             EEEEECCCCCCHHHHHHHHH---CC----CCCCCCCCCC---------CCC-CCCCCCEECCCCCCC--CCEEECCCCCC
T ss_conf             79995589986899999986---88----9887775888---------887-467786204799999--87697289999


Q ss_pred             -CCCHHHHH---HHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCC
Q ss_conf             -55289999---9998604569999558888834799999998739978999817676587
Q gi|254780264|r   91 -VDFTMEVE---RSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKMGA  147 (701)
Q Consensus        91 -~DF~~Ev~---~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~~~  147 (701)
T Consensus        64 t~~f~~~~Yl~~~~~~~yD~fiiiss--~rf~~nd~~la~~i~~~gK~fyfVRsK~D~dl~  122 (197)
T cd04104          64 STAFPPDDYLEEMKFSEYDFFIIISS--TRFSSNDVKLAKAIQCMGKKFYFVRTKVDRDLS  122 (197)
T ss_pred             CCCCCHHHHHHHCCCCCCCEEEEEEC--CCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCC
T ss_conf             87659899998658554578999838--864142699999999809928999861214000