HHsearch alignment for GI: 254780264 and conserved domain: cd04106

>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=98.55  E-value=8.1e-07  Score=62.52  Aligned_cols=114  Identities=15%  Similarity=0.235  Sum_probs=73.8

Q ss_pred             EEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCC
Q ss_conf             99986878897789999999808732142201795613780889870853764079999607778713899981798755
Q gi|254780264|r   13 FGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHVD   92 (701)
Q Consensus        13 v~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~D   92 (701)
T Consensus         3 ivvlGd~~VGKTsLi~r~~~~~--f~~--~------y~~------Tig~~~~~k~i~--~-~~~~~~v~l~iwDtaG~e~   63 (162)
T cd04106           3 VIVVGNGNVGKSSMIQRFVKGI--FTK--D------YKK------TIGVDFLEKQIF--L-RQSDEDVRLMLWDTAGQEE   63 (162)
T ss_pred             EEEECCCCCCHHHHHHHHHHCC--CCC--C------CCC------CCCCEEEEEEEE--E-CCCCEEEEEEEEECCCCCC
T ss_conf             9999999988999999998496--898--7------688------556257887899--8-6799799999997899701


Q ss_pred             CHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHH---HCCCCEEEEECCCCCC
Q ss_conf             2899999998604569999558888834799999998---7399789998176765
Q gi|254780264|r   93 FTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQAD---KYSVPRVIFCNKMDKM  145 (701)
Q Consensus        93 F~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~---~~~lp~ilvINKiDr~  145 (701)
T Consensus        64 ~~~l~~~~~~~a~~~ilvydvt~~~Sf~~l~~w~~~~~~~~~~~piilVgNK~DL~  119 (162)
T cd04106          64 FDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLL  119 (162)
T ss_pred             CCCCHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHH
T ss_conf             34152456123031268840698899999999999999766996299984054441