HHsearch alignment for GI: 254780264 and conserved domain: cd04124

>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=98.75  E-value=2.7e-07  Score=65.55  Aligned_cols=111  Identities=16%  Similarity=0.270  Sum_probs=74.3

Q ss_pred             EEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCC
Q ss_conf             99986878897789999999808732142201795613780889870853764079999607778713899981798755
Q gi|254780264|r   13 FGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHVD   92 (701)
Q Consensus        13 v~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~D   92 (701)
T Consensus         3 ivllGd~~VGKTsli~r~~~~~--f~~----~----~~~------Tig~~~~~~~--~~---~~~~~~~l~iwDtaG~e~   61 (161)
T cd04124           3 IILLGDSAVGKSKLVERFLMDG--YEP----Q----QLS------TYALTLYKHN--AK---FEGKTILVDFWDTAGQER   61 (161)
T ss_pred             EEEECCCCCCHHHHHHHHHHCC--CCC----C----CCC------CCCEEEEEEE--EE---ECCEEEEEEEEECCCCCC
T ss_conf             9999989967899999998097--799----7----266------5415799999--99---999999999997999843


Q ss_pred             CHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHH-HHH--HCCCCEEEEECCCCC
Q ss_conf             2899999998604569999558888834799999-998--739978999817676
Q gi|254780264|r   93 FTMEVERSIRVTDGAIALLDSNAGVEPQTETVWR-QAD--KYSVPRVIFCNKMDK  144 (701)
Q Consensus        93 F~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr-~~~--~~~lp~ilvINKiDr  144 (701)
T Consensus        62 f~~~~~~y~~~a~~~ilvfDit~~~Sf~~~~~w~~~i~~~~~~~p~ilVgNK~DL  116 (161)
T cd04124          62 FQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDL  116 (161)
T ss_pred             CCHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf             4324699735687679999689778899999999999986869989999997117