HHsearch alignment for GI: 254780264 and conserved domain: cd04130
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=98.45 E-value=3.5e-06 Score=58.38 Aligned_cols=110 Identities=18% Similarity=0.139 Sum_probs=73.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEE-EEEEEECCCCCCCEEEEEEECCCCC
Q ss_conf 999868788977899999998087321422017956137808898708537640-7999960777871389998179875
Q gi|254780264|r 13 FGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSA-STTVFWPGRDGGQKKLTIIDTPGHV 91 (701)
Q Consensus 13 v~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss-~~sl~~~~~~~~~~~iNlIDTPGH~ 91 (701)
T Consensus 3 vvlvGd~~VGKTsli~r~~~~~--F~~--~------y~p----------T~~~~~~~~i~~---~~~~v~l~iwDtaG~e 59 (173)
T cd04130 3 CVLVGDGAVGKTSLIVSYTTNG--YPT--E------YVP----------TAFDNFSVVVLV---DGKPVRLQLCDTAGQD 59 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHCC--CCC--C------CCC----------CEEEEEEEEEEE---CCEEEEEEEEECCCCC
T ss_conf 9999989978899999996199--999--8------578----------358999999999---9999999999899873
Q ss_pred CCHHHHHHHHHHHCEEEEEEECCCCCCHHHH-HHHHH-H--HHCCCCEEEEECCCCCC
Q ss_conf 5289999999860456999955888883479-99999-9--87399789998176765
Q gi|254780264|r 92 DFTMEVERSIRVTDGAIALLDSNAGVEPQTE-TVWRQ-A--DKYSVPRVIFCNKMDKM 145 (701)
Q Consensus 92 DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~-~vlr~-~--~~~~lp~ilvINKiDr~ 145 (701)
T Consensus 60 ~~~~l~~~~~~~a~~~ilvydv~~~~Sf~~l~~~w~~~i~~~~~~~piilvGnK~DL~ 117 (173)
T cd04130 60 EFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLR 117 (173)
T ss_pred CCCHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCC
T ss_conf 4434567661378789999965987889999999999999609899889998870110