HHsearch alignment for GI: 254780264 and conserved domain: cd04131
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.35 E-value=7.5e-06 Score=56.30 Aligned_cols=110 Identities=14% Similarity=0.130 Sum_probs=74.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEE-EEEEEECCCCCCCEEEEEEECCCC
Q ss_conf 7999868788977899999998087321422017956137808898708537640-799996077787138999817987
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSA-STTVFWPGRDGGQKKLTIIDTPGH 90 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss-~~sl~~~~~~~~~~~iNlIDTPGH 90 (701)
T Consensus 3 KivlvGd~~VGKTsLi~r~~~--~~F~~----~----y~----------pTi~~~~~~~~~v---~~~~v~l~iwDTaGq 59 (178)
T cd04131 3 KIVVVGDVQCGKTALLQVFAK--DCYPE----T----YV----------PTVFENYTASFEI---DEQRIELSLWDTSGS 59 (178)
T ss_pred EEEEECCCCCCHHHHHHHHHC--CCCCC----C----CC----------CCEEEEEEEEEEE---CCEEEEEEEEECCCC
T ss_conf 999999999778999999963--99999----8----57----------8568888999999---999999999968987
Q ss_pred CCCHHHHHHHHHHHCEEEEEEECCCCCCHHH-HHHHHH-HH--HCCCCEEEEECCCCC
Q ss_conf 5528999999986045699995588888347-999999-98--739978999817676
Q gi|254780264|r 91 VDFTMEVERSIRVTDGAIALLDSNAGVEPQT-ETVWRQ-AD--KYSVPRVIFCNKMDK 144 (701)
Q Consensus 91 ~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT-~~vlr~-~~--~~~lp~ilvINKiDr 144 (701)
T Consensus 60 e~~~~l~~~~y~~a~~~ilvydit~~~Sf~~v~~~W~~ei~~~~~~~~iiLVGnK~DL 117 (178)
T cd04131 60 PYYDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDL 117 (178)
T ss_pred HHHCCHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 4211036677346878999973798788999999999999986879988999985436