HHsearch alignment for GI: 254780264 and conserved domain: cd04131

>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.35  E-value=7.5e-06  Score=56.30  Aligned_cols=110  Identities=14%  Similarity=0.130  Sum_probs=74.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEE-EEEEEECCCCCCCEEEEEEECCCC
Q ss_conf             7999868788977899999998087321422017956137808898708537640-799996077787138999817987
Q gi|254780264|r   12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSA-STTVFWPGRDGGQKKLTIIDTPGH   90 (701)
Q Consensus        12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss-~~sl~~~~~~~~~~~iNlIDTPGH   90 (701)
T Consensus         3 KivlvGd~~VGKTsLi~r~~~--~~F~~----~----y~----------pTi~~~~~~~~~v---~~~~v~l~iwDTaGq   59 (178)
T cd04131           3 KIVVVGDVQCGKTALLQVFAK--DCYPE----T----YV----------PTVFENYTASFEI---DEQRIELSLWDTSGS   59 (178)
T ss_pred             EEEEECCCCCCHHHHHHHHHC--CCCCC----C----CC----------CCEEEEEEEEEEE---CCEEEEEEEEECCCC
T ss_conf             999999999778999999963--99999----8----57----------8568888999999---999999999968987


Q ss_pred             CCCHHHHHHHHHHHCEEEEEEECCCCCCHHH-HHHHHH-HH--HCCCCEEEEECCCCC
Q ss_conf             5528999999986045699995588888347-999999-98--739978999817676
Q gi|254780264|r   91 VDFTMEVERSIRVTDGAIALLDSNAGVEPQT-ETVWRQ-AD--KYSVPRVIFCNKMDK  144 (701)
Q Consensus        91 ~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT-~~vlr~-~~--~~~lp~ilvINKiDr  144 (701)
T Consensus        60 e~~~~l~~~~y~~a~~~ilvydit~~~Sf~~v~~~W~~ei~~~~~~~~iiLVGnK~DL  117 (178)
T cd04131          60 PYYDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDL  117 (178)
T ss_pred             HHHCCHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf             4211036677346878999973798788999999999999986879988999985436