HHsearch alignment for GI: 254780264 and conserved domain: cd04132

>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.67  E-value=6e-07  Score=63.34  Aligned_cols=113  Identities=17%  Similarity=0.124  Sum_probs=74.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCC
Q ss_conf             79998687889778999999980873214220179561378088987085376407999960777871389998179875
Q gi|254780264|r   12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHV   91 (701)
Q Consensus        12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~   91 (701)
T Consensus         2 KivlvGd~~VGKTsli~r~~~--~~F~~--------~~~----------pTi~~~~~~~-~~~~~~~~v~l~iwDtaG~e   60 (187)
T cd04132           2 KIVVVGDGGCGKTCLLIVYSQ--GKFPE--------EYV----------PTVFENYVTN-IQGPNGKIIELALWDTAGQE   60 (187)
T ss_pred             EEEEECCCCCCHHHHHHHHHH--CCCCC--------CCC----------CCEEEEEEEE-EEEECCEEEEEEEEECCCCC
T ss_conf             899999499769999999963--98999--------758----------9664799999-99549989999999699971


Q ss_pred             CCHHHHHHHHHHHCEEEEEEECCCCCCHHHH-HHHHH-HH--HCCCCEEEEECCCCCC
Q ss_conf             5289999999860456999955888883479-99999-98--7399789998176765
Q gi|254780264|r   92 DFTMEVERSIRVTDGAIALLDSNAGVEPQTE-TVWRQ-AD--KYSVPRVIFCNKMDKM  145 (701)
Q Consensus        92 DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~-~vlr~-~~--~~~lp~ilvINKiDr~  145 (701)
T Consensus        61 ~~~~l~~~~~~~a~~~ilvydit~~~Sf~~i~~~W~~~i~~~~~~~piilVgnK~DL~  118 (187)
T cd04132          61 EYDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLR  118 (187)
T ss_pred             CCCCCHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHH
T ss_conf             1053434453003488895036876779999999999999868999979999872212