HHsearch alignment for GI: 254780264 and conserved domain: cd04132
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.67 E-value=6e-07 Score=63.34 Aligned_cols=113 Identities=17% Similarity=0.124 Sum_probs=74.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCC
Q ss_conf 79998687889778999999980873214220179561378088987085376407999960777871389998179875
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHV 91 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~ 91 (701)
T Consensus 2 KivlvGd~~VGKTsli~r~~~--~~F~~--------~~~----------pTi~~~~~~~-~~~~~~~~v~l~iwDtaG~e 60 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQ--GKFPE--------EYV----------PTVFENYVTN-IQGPNGKIIELALWDTAGQE 60 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHH--CCCCC--------CCC----------CCEEEEEEEE-EEEECCEEEEEEEEECCCCC
T ss_conf 899999499769999999963--98999--------758----------9664799999-99549989999999699971
Q ss_pred CCHHHHHHHHHHHCEEEEEEECCCCCCHHHH-HHHHH-HH--HCCCCEEEEECCCCCC
Q ss_conf 5289999999860456999955888883479-99999-98--7399789998176765
Q gi|254780264|r 92 DFTMEVERSIRVTDGAIALLDSNAGVEPQTE-TVWRQ-AD--KYSVPRVIFCNKMDKM 145 (701)
Q Consensus 92 DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~-~vlr~-~~--~~~lp~ilvINKiDr~ 145 (701)
T Consensus 61 ~~~~l~~~~~~~a~~~ilvydit~~~Sf~~i~~~W~~~i~~~~~~~piilVgnK~DL~ 118 (187)
T cd04132 61 EYDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLR 118 (187)
T ss_pred CCCCCHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHH
T ss_conf 1053434453003488895036876779999999999999868999979999872212