HHsearch alignment for GI: 254780264 and conserved domain: cd04133
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=98.50 E-value=4e-06 Score=58.02 Aligned_cols=109 Identities=21% Similarity=0.170 Sum_probs=72.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEE-EEEEEECCCCCCCEEEEEEECCCCC
Q ss_conf 999868788977899999998087321422017956137808898708537640-7999960777871389998179875
Q gi|254780264|r 13 FGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSA-STTVFWPGRDGGQKKLTIIDTPGHV 91 (701)
Q Consensus 13 v~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss-~~sl~~~~~~~~~~~iNlIDTPGH~ 91 (701)
T Consensus 4 ivllGd~~VGKTsL~~rf~~--~~F~~----~----~~----------pTi~~~~~~~i~---v~~~~~~l~iwDTaG~e 60 (176)
T cd04133 4 CVTVGDGAVGKTCMLICYTS--NKFPT----D----YI----------PTVFDNFSANVS---VDGNTVNLGLWDTAGQE 60 (176)
T ss_pred EEEECCCCCCHHHHHHHHHH--CCCCC----C----CC----------CCEEEEEEEEEE---ECCEEEEEEEEECCCCC
T ss_conf 99989999779999999965--98999----8----67----------853589999999---99989999999799976
Q ss_pred CCHHHHHHHHHHHCEEEEEEECCCCCCHHH-HHHHH-HHH--HCCCCEEEEECCCCC
Q ss_conf 528999999986045699995588888347-99999-998--739978999817676
Q gi|254780264|r 92 DFTMEVERSIRVTDGAIALLDSNAGVEPQT-ETVWR-QAD--KYSVPRVIFCNKMDK 144 (701)
Q Consensus 92 DF~~Ev~~aL~~~DgailvVDa~eGv~~qT-~~vlr-~~~--~~~lp~ilvINKiDr 144 (701)
T Consensus 61 ~~~~l~~~~y~~a~~~ilvydi~~~~Sf~~~~~~w~~~~~~~~~~~piilvGnK~DL 117 (176)
T cd04133 61 DYNRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDL 117 (176)
T ss_pred CCCHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHH
T ss_conf 542468987267875799997898789999999999999986849988999986320