HHsearch alignment for GI: 254780264 and conserved domain: cd04137

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=98.68  E-value=2.3e-07  Score=65.98  Aligned_cols=112  Identities=21%  Similarity=0.314  Sum_probs=74.7

Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCC
Q ss_conf             27999868788977899999998087321422017956137808898708537640799996077787138999817987
Q gi|254780264|r   11 RNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGH   90 (701)
Q Consensus        11 RNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH   90 (701)
T Consensus         2 ~KIvlvGd~~VGKTsli~r~~~--~~f~~--------~y~~Ti~~~------~-~k--~i~~---~~~~~~l~iwDtaG~   59 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVE--GHFVE--------SYYPTIENT------F-SK--IIRY---KGQDYHLEIVDTAGQ   59 (180)
T ss_pred             CEEEEECCCCCCHHHHHHHHHC--CCCCC--------CCCCCCCCC------C-CE--EEEE---CCEEEEEEEEECCCC
T ss_conf             8899999899889999999970--97899--------858812441------1-37--9999---999999999989987


Q ss_pred             CCCHHHHHHHHHHHCEEEEEEECCCCCCHHH-HHHHHH----HHHCCCCEEEEECCCCC
Q ss_conf             5528999999986045699995588888347-999999----98739978999817676
Q gi|254780264|r   91 VDFTMEVERSIRVTDGAIALLDSNAGVEPQT-ETVWRQ----ADKYSVPRVIFCNKMDK  144 (701)
Q Consensus        91 ~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT-~~vlr~----~~~~~lp~ilvINKiDr  144 (701)
T Consensus        60 e~~~~~~~~~~~~a~~~ilvydvt~~~Sf~~~~~~~~~~~~~~~~~~~piilVgNK~DL  118 (180)
T cd04137          60 DEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDL  118 (180)
T ss_pred             CCCCHHHHHHHHHCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCC
T ss_conf             01006679998635578999743887889999999999999758888867977653462