HHsearch alignment for GI: 254780264 and conserved domain: cd04137
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=98.68 E-value=2.3e-07 Score=65.98 Aligned_cols=112 Identities=21% Similarity=0.314 Sum_probs=74.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCC
Q ss_conf 27999868788977899999998087321422017956137808898708537640799996077787138999817987
Q gi|254780264|r 11 RNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGH 90 (701)
Q Consensus 11 RNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH 90 (701)
T Consensus 2 ~KIvlvGd~~VGKTsli~r~~~--~~f~~--------~y~~Ti~~~------~-~k--~i~~---~~~~~~l~iwDtaG~ 59 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVE--GHFVE--------SYYPTIENT------F-SK--IIRY---KGQDYHLEIVDTAGQ 59 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHC--CCCCC--------CCCCCCCCC------C-CE--EEEE---CCEEEEEEEEECCCC
T ss_conf 8899999899889999999970--97899--------858812441------1-37--9999---999999999989987
Q ss_pred CCCHHHHHHHHHHHCEEEEEEECCCCCCHHH-HHHHHH----HHHCCCCEEEEECCCCC
Q ss_conf 5528999999986045699995588888347-999999----98739978999817676
Q gi|254780264|r 91 VDFTMEVERSIRVTDGAIALLDSNAGVEPQT-ETVWRQ----ADKYSVPRVIFCNKMDK 144 (701)
Q Consensus 91 ~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT-~~vlr~----~~~~~lp~ilvINKiDr 144 (701)
T Consensus 60 e~~~~~~~~~~~~a~~~ilvydvt~~~Sf~~~~~~~~~~~~~~~~~~~piilVgNK~DL 118 (180)
T cd04137 60 DEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDL 118 (180)
T ss_pred CCCCHHHHHHHHHCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCC
T ss_conf 01006679998635578999743887889999999999999758888867977653462