HHsearch alignment for GI: 254780264 and conserved domain: cd04144
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.62 E-value=9.3e-07 Score=62.13 Aligned_cols=109 Identities=25% Similarity=0.280 Sum_probs=73.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEE-EEEECCCCCCCEEEEEEECCCCC
Q ss_conf 99986878897789999999808732142201795613780889870853764079-99960777871389998179875
Q gi|254780264|r 13 FGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSAST-TVFWPGRDGGQKKLTIIDTPGHV 91 (701)
Q Consensus 13 v~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~-sl~~~~~~~~~~~iNlIDTPGH~ 91 (701)
T Consensus 2 ivviGd~gVGKTsli~r~~~--~~F~~--~------y~----------pTi~~~~~k~~~~---~~~~~~l~iwDtaG~e 58 (190)
T cd04144 2 LVVLGDGGVGKTALTIQLCL--NHFVE--T------YD----------PTIEDSYRKQVVV---DGQPCMLEVLDTAGQE 58 (190)
T ss_pred EEEECCCCCCHHHHHHHHHH--CCCCC--C------CC----------CCCCEEEEEEEEE---CCEEEEEEEEECCCCC
T ss_conf 89999899878999999962--97998--8------69----------9724788999999---9999999999899973
Q ss_pred CCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHH-HH---H---HCCCCEEEEECCCCC
Q ss_conf 52899999998604569999558888834799999-99---8---739978999817676
Q gi|254780264|r 92 DFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWR-QA---D---KYSVPRVIFCNKMDK 144 (701)
Q Consensus 92 DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr-~~---~---~~~lp~ilvINKiDr 144 (701)
T Consensus 59 ~~~~l~~~~~r~a~~~ilVydvtd~~SF~~l~~w~~~i~~~~~~~~~~~piiLVGNK~Dl 118 (190)
T cd04144 59 EYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDK 118 (190)
T ss_pred CHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCH
T ss_conf 116788998236765899972797789999999999999985337999528951455350