HHsearch alignment for GI: 254780264 and conserved domain: cd04144

>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.62  E-value=9.3e-07  Score=62.13  Aligned_cols=109  Identities=25%  Similarity=0.280  Sum_probs=73.5

Q ss_pred             EEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEE-EEEECCCCCCCEEEEEEECCCCC
Q ss_conf             99986878897789999999808732142201795613780889870853764079-99960777871389998179875
Q gi|254780264|r   13 FGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSAST-TVFWPGRDGGQKKLTIIDTPGHV   91 (701)
Q Consensus        13 v~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~-sl~~~~~~~~~~~iNlIDTPGH~   91 (701)
T Consensus         2 ivviGd~gVGKTsli~r~~~--~~F~~--~------y~----------pTi~~~~~k~~~~---~~~~~~l~iwDtaG~e   58 (190)
T cd04144           2 LVVLGDGGVGKTALTIQLCL--NHFVE--T------YD----------PTIEDSYRKQVVV---DGQPCMLEVLDTAGQE   58 (190)
T ss_pred             EEEECCCCCCHHHHHHHHHH--CCCCC--C------CC----------CCCCEEEEEEEEE---CCEEEEEEEEECCCCC
T ss_conf             89999899878999999962--97998--8------69----------9724788999999---9999999999899973


Q ss_pred             CCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHH-HH---H---HCCCCEEEEECCCCC
Q ss_conf             52899999998604569999558888834799999-99---8---739978999817676
Q gi|254780264|r   92 DFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWR-QA---D---KYSVPRVIFCNKMDK  144 (701)
Q Consensus        92 DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr-~~---~---~~~lp~ilvINKiDr  144 (701)
T Consensus        59 ~~~~l~~~~~r~a~~~ilVydvtd~~SF~~l~~w~~~i~~~~~~~~~~~piiLVGNK~Dl  118 (190)
T cd04144          59 EYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDK  118 (190)
T ss_pred             CHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCH
T ss_conf             116788998236765899972797789999999999999985337999528951455350