HHsearch alignment for GI: 254780264 and conserved domain: cd04153

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.16  E-value=1.5e-09  Score=80.11  Aligned_cols=112  Identities=21%  Similarity=0.226  Sum_probs=79.9

Q ss_pred             HEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECC
Q ss_conf             25279998687889778999999980873214220179561378088987085376407999960777871389998179
Q gi|254780264|r    9 DSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTP   88 (701)
Q Consensus         9 ~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTP   88 (701)
T Consensus        14 k~~KililG~~~sGKTsil~~l~~--~~~~~---~----------------~pT~G~~~~~i~~~-----~~~~~iwD~~   67 (174)
T cd04153          14 KEYKVIIVGLDNAGKTTILYQFLL--GEVVH---T----------------SPTIGSNVEEIVYK-----NIRFLMWDIG   67 (174)
T ss_pred             CEEEEEEECCCCCCHHHHHHHHHC--CCCCC---C----------------CCCCCCCEEEEEEC-----CEEEEEEECC
T ss_conf             779999998999988999999973--99277---1----------------67236046999978-----8899999899


Q ss_pred             CCCCCHHHHHHHHHHHCEEEEEEECCCCCC-HHHHHHHHHHHH----CCCCEEEEECCCCCCC
Q ss_conf             875528999999986045699995588888-347999999987----3997899981767658
Q gi|254780264|r   89 GHVDFTMEVERSIRVTDGAIALLDSNAGVE-PQTETVWRQADK----YSVPRVIFCNKMDKMG  146 (701)
Q Consensus        89 GH~DF~~Ev~~aL~~~DgailvVDa~eGv~-~qT~~vlr~~~~----~~lp~ilvINKiDr~~  146 (701)
T Consensus        68 G~e~~~~~~~~y~~~a~~ii~VvD~sd~~~~~~~~~~l~~~l~~~~~~~~pili~~NK~Dl~~  130 (174)
T cd04153          68 GQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKG  130 (174)
T ss_pred             CCCCCCCHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCC
T ss_conf             986566226777057753799997678889999999999997261016982899995555655