HHsearch alignment for GI: 254780264 and conserved domain: cd04153
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.16 E-value=1.5e-09 Score=80.11 Aligned_cols=112 Identities=21% Similarity=0.226 Sum_probs=79.9
Q ss_pred HEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECC
Q ss_conf 25279998687889778999999980873214220179561378088987085376407999960777871389998179
Q gi|254780264|r 9 DSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTP 88 (701)
Q Consensus 9 ~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTP 88 (701)
T Consensus 14 k~~KililG~~~sGKTsil~~l~~--~~~~~---~----------------~pT~G~~~~~i~~~-----~~~~~iwD~~ 67 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLL--GEVVH---T----------------SPTIGSNVEEIVYK-----NIRFLMWDIG 67 (174)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHC--CCCCC---C----------------CCCCCCCEEEEEEC-----CEEEEEEECC
T ss_conf 779999998999988999999973--99277---1----------------67236046999978-----8899999899
Q ss_pred CCCCCHHHHHHHHHHHCEEEEEEECCCCCC-HHHHHHHHHHHH----CCCCEEEEECCCCCCC
Q ss_conf 875528999999986045699995588888-347999999987----3997899981767658
Q gi|254780264|r 89 GHVDFTMEVERSIRVTDGAIALLDSNAGVE-PQTETVWRQADK----YSVPRVIFCNKMDKMG 146 (701)
Q Consensus 89 GH~DF~~Ev~~aL~~~DgailvVDa~eGv~-~qT~~vlr~~~~----~~lp~ilvINKiDr~~ 146 (701)
T Consensus 68 G~e~~~~~~~~y~~~a~~ii~VvD~sd~~~~~~~~~~l~~~l~~~~~~~~pili~~NK~Dl~~ 130 (174)
T cd04153 68 GQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKG 130 (174)
T ss_pred CCCCCCCHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCC
T ss_conf 986566226777057753799997678889999999999997261016982899995555655