HHsearch alignment for GI: 254780264 and conserved domain: cd04156
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.00 E-value=1.2e-08 Score=74.17 Aligned_cols=109 Identities=20% Similarity=0.202 Sum_probs=75.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCC
Q ss_conf 99986878897789999999808732142201795613780889870853764079999607778713899981798755
Q gi|254780264|r 13 FGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHVD 92 (701)
Q Consensus 13 v~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~D 92 (701)
T Consensus 2 ivilG~~~~GKTsil~r~~--~~~~~~---------~----------~pTig~~~~~~~~~----~~~~l~iwD~~G~e~ 56 (160)
T cd04156 2 VLLLGLDSAGKSTLLYKLK--HAELVT---------T----------IPTVGFNVEMLQLE----KHLSLTVWDVGGQEK 56 (160)
T ss_pred EEEECCCCCCHHHHHHHHH--CCCCCC---------C----------CCCCCEEEEEEEEC----CEEEEEEEECCCCCC
T ss_conf 9999999999999999995--698777---------5----------77615038999989----989999997898624
Q ss_pred CHHHHHHHHHHHCEEEEEEECCCCCCH-HHHHHHHHH----HHCCCCEEEEECCCCCCC
Q ss_conf 289999999860456999955888883-479999999----873997899981767658
Q gi|254780264|r 93 FTMEVERSIRVTDGAIALLDSNAGVEP-QTETVWRQA----DKYSVPRVIFCNKMDKMG 146 (701)
Q Consensus 93 F~~Ev~~aL~~~DgailvVDa~eGv~~-qT~~vlr~~----~~~~lp~ilvINKiDr~~ 146 (701)
T Consensus 57 ~~~~~~~y~~~a~~iI~V~D~td~~~~~~~~~~~~~~l~~~~~~~~pili~~NK~Dl~~ 115 (160)
T cd04156 57 MRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPG 115 (160)
T ss_pred CCHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCC
T ss_conf 74158877456778999985686788787999999998663537874999998633656