HHsearch alignment for GI: 254780264 and conserved domain: cd04157
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.20 E-value=8.3e-10 Score=81.69 Aligned_cols=111 Identities=21% Similarity=0.186 Sum_probs=76.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCC
Q ss_conf 79998687889778999999980873214220179561378088987085376407999960777871389998179875
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHV 91 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~ 91 (701)
T Consensus 1 ~Il~lGl~~sGKTtil~~l~~~~~~~~~---------~----------~pT~G~~~~~~~~-----~~~~~~iwD~~G~~ 56 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQI---------I----------VPTVGFNVESFEK-----GNLSFTAFDMSGQG 56 (162)
T ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCC---------C----------CCCCCEEEEEEEE-----CCEEEEEEECCCCC
T ss_conf 9999999999889999999728987564---------1----------6850757899983-----99889999858874
Q ss_pred CCHHHHHHHHHHHCEEEEEEECCCCCCHH-HHHHHHHHH------HCCCCEEEEECCCCCCC
Q ss_conf 52899999998604569999558888834-799999998------73997899981767658
Q gi|254780264|r 92 DFTMEVERSIRVTDGAIALLDSNAGVEPQ-TETVWRQAD------KYSVPRVIFCNKMDKMG 146 (701)
Q Consensus 92 DF~~Ev~~aL~~~DgailvVDa~eGv~~q-T~~vlr~~~------~~~lp~ilvINKiDr~~ 146 (701)
T Consensus 57 ~~r~lw~~y~~~~~~iI~VvDssd~~~~~~~~~~l~~ll~~~~~~~~~~PiLI~~NK~D~~~ 118 (162)
T cd04157 57 KYRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPD 118 (162)
T ss_pred CCCHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCHHHCCCCCEEEEEEECCCCCC
T ss_conf 42055898705674489997076388899999999999717655179845999981477889