HHsearch alignment for GI: 254780264 and conserved domain: cd04158
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=98.89 E-value=6.6e-08 Score=69.51 Aligned_cols=109 Identities=22% Similarity=0.166 Sum_probs=76.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCC
Q ss_conf 99986878897789999999808732142201795613780889870853764079999607778713899981798755
Q gi|254780264|r 13 FGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHVD 92 (701)
Q Consensus 13 v~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~D 92 (701)
T Consensus 2 IlilGl~~sGKTtil~~l~--~~~~~~------------~~-------pT~G~~~~~i~~~-----~~~l~iwD~gG~~~ 55 (169)
T cd04158 2 VVTLGLDGAGKTTILFKLK--QDEFMQ------------PI-------PTIGFNVETVEYK-----NLKFTIWDVGGKHK 55 (169)
T ss_pred EEEECCCCCCHHHHHHHHH--CCCCCC------------CC-------CCCCCCEEEEEEC-----CEEEEEEECCCCCC
T ss_conf 9999989998899999995--799689------------77-------8688166999989-----88999998999724
Q ss_pred CHHHHHHHHHHHCEEEEEEECCCCCCHH-H----HHHHHHHHHCCCCEEEEECCCCCCCC
Q ss_conf 2899999998604569999558888834-7----99999998739978999817676587
Q gi|254780264|r 93 FTMEVERSIRVTDGAIALLDSNAGVEPQ-T----ETVWRQADKYSVPRVIFCNKMDKMGA 147 (701)
Q Consensus 93 F~~Ev~~aL~~~DgailvVDa~eGv~~q-T----~~vlr~~~~~~lp~ilvINKiDr~~~ 147 (701)
T Consensus 56 ~r~~w~~Yy~~~~~iIfVvDssd~~~~~ea~~~l~~ll~~~~~~~~piLIlaNK~Dl~~~ 115 (169)
T cd04158 56 LRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGA 115 (169)
T ss_pred CCHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCC
T ss_conf 463678755576279999986306779999999999971275379849999735567779