HHsearch alignment for GI: 254780264 and conserved domain: cd04165
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.93 E-value=1.2e-25 Score=183.47 Aligned_cols=197 Identities=23% Similarity=0.323 Sum_probs=133.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCC----EECCCHHHHHHHCCCEEEEE--EEE-------EECC-----
Q ss_conf 99986878897789999999808732142201795----61378088987085376407--999-------9607-----
Q gi|254780264|r 13 FGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGS----ATMDWMEQEQERGITITSAS--TTV-------FWPG----- 74 (701)
Q Consensus 13 v~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~----~~~D~~~~E~eRgITi~ss~--~sl-------~~~~----- 74 (701)
T Consensus 2 v~v~GhVD~GKSTL~G~Lt~--g------~lDdGrg~ar~~~~rh~hE~~~G~Tssi~~~~lgf~~~g~~~~~~~~~~~~ 73 (224)
T cd04165 2 VAVVGNVDAGKSTLLGVLTQ--G------ELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSE 73 (224)
T ss_pred EEEEECCCCCHHHHHHHHHC--C------CCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCEECCCCCCCCC
T ss_conf 89994858848899999856--7------742221067778776189997265441156554010145320213476544
Q ss_pred -----CCCCCEEEEEEECCCCCCCHHHHHHHHH--HHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCC
Q ss_conf -----7787138999817987552899999998--604569999558888834799999998739978999817676587
Q gi|254780264|r 75 -----RDGGQKKLTIIDTPGHVDFTMEVERSIR--VTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKMGA 147 (701)
Q Consensus 75 -----~~~~~~~iNlIDTPGH~DF~~Ev~~aL~--~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~~~ 147 (701)
T Consensus 74 ~~~~~~~~~~k~it~iD~pGH~~y~kt~i~G~~~~~~d~~~LvV~A~~G~~~~T~ehl~l~~~l~ip~~vvitKiDl~~~ 153 (224)
T cd04165 74 SDIEICEKSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLAPA 153 (224)
T ss_pred CCEEEECCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCH
T ss_conf 22012136786799997887399999999876355689899993178897799999999999839998999989776898
Q ss_pred C-HHHHHHHHCCCCCCCCCEECCCCCCCCCCCEEEEEHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5-555666411110268330002345556653024422344311452226985138740043178899999988630023
Q gi|254780264|r 148 D-FYRSVEMISSRLGANPLVIQLPVGSESNFQGVIDLVEMKALLWKNEDLGSSWDVVEIPEDMKDSANSYRDKMIESIVE 226 (701)
Q Consensus 148 d-~~~~l~~i~~~l~~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lle~i~~ 226 (701)
T Consensus 154 ~~l~~~~~~i~~~lk~p~-~~k~p~~---------------------------------------------------v~~ 181 (224)
T cd04165 154 NILQETLKDLKRILKVPG-VRKLPVP---------------------------------------------------VKS 181 (224)
T ss_pred HHHHHHHHHHHHHHCCCC-CCCCCEE---------------------------------------------------CCC
T ss_conf 999999999999970447-5568702---------------------------------------------------168
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHCCEEECCEEEECCCCCEECCCCHHHHHHHHHHHCCCH
Q ss_conf 4578999863277899889873000003101003234310001221024889898717862
Q gi|254780264|r 227 LDDSAMDSYLQGESFSSDRIRSLIRLGTISVKFFPVLCGSSFKNKGVQPLLDAVVDYLPSP 287 (701)
Q Consensus 227 ~dd~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~pv~~gsa~~~~Gv~~LLd~i~~~lPsP 287 (701)
T Consensus 182 ~~d~~~~-----------------a~~~~~~~ivPIf~vS~VtG~Gi~~-L~~fL~~LP~r 224 (224)
T cd04165 182 DDDVVLA-----------------ASNFSSERIVPIFQVSNVTGEGLDL-LHAFLNLLPLR 224 (224)
T ss_pred HHHHHHH-----------------HHCCCCCCCCCEEEEECCCCCCHHH-HHHHHHHCCCC
T ss_conf 5889999-----------------8648867774679976589879999-99999876999