HHsearch alignment for GI: 254780264 and conserved domain: cd04165

>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.93  E-value=1.2e-25  Score=183.47  Aligned_cols=197  Identities=23%  Similarity=0.323  Sum_probs=133.0

Q ss_pred             EEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCC----EECCCHHHHHHHCCCEEEEE--EEE-------EECC-----
Q ss_conf             99986878897789999999808732142201795----61378088987085376407--999-------9607-----
Q gi|254780264|r   13 FGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGS----ATMDWMEQEQERGITITSAS--TTV-------FWPG-----   74 (701)
Q Consensus        13 v~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~----~~~D~~~~E~eRgITi~ss~--~sl-------~~~~-----   74 (701)
T Consensus         2 v~v~GhVD~GKSTL~G~Lt~--g------~lDdGrg~ar~~~~rh~hE~~~G~Tssi~~~~lgf~~~g~~~~~~~~~~~~   73 (224)
T cd04165           2 VAVVGNVDAGKSTLLGVLTQ--G------ELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSE   73 (224)
T ss_pred             EEEEECCCCCHHHHHHHHHC--C------CCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCEECCCCCCCCC
T ss_conf             89994858848899999856--7------742221067778776189997265441156554010145320213476544


Q ss_pred             -----CCCCCEEEEEEECCCCCCCHHHHHHHHH--HHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCC
Q ss_conf             -----7787138999817987552899999998--604569999558888834799999998739978999817676587
Q gi|254780264|r   75 -----RDGGQKKLTIIDTPGHVDFTMEVERSIR--VTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKMGA  147 (701)
Q Consensus        75 -----~~~~~~~iNlIDTPGH~DF~~Ev~~aL~--~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~~~  147 (701)
T Consensus        74 ~~~~~~~~~~k~it~iD~pGH~~y~kt~i~G~~~~~~d~~~LvV~A~~G~~~~T~ehl~l~~~l~ip~~vvitKiDl~~~  153 (224)
T cd04165          74 SDIEICEKSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLAPA  153 (224)
T ss_pred             CCEEEECCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCH
T ss_conf             22012136786799997887399999999876355689899993178897799999999999839998999989776898


Q ss_pred             C-HHHHHHHHCCCCCCCCCEECCCCCCCCCCCEEEEEHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHH
Q ss_conf             5-555666411110268330002345556653024422344311452226985138740043178899999988630023
Q gi|254780264|r  148 D-FYRSVEMISSRLGANPLVIQLPVGSESNFQGVIDLVEMKALLWKNEDLGSSWDVVEIPEDMKDSANSYRDKMIESIVE  226 (701)
Q Consensus       148 d-~~~~l~~i~~~l~~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lle~i~~  226 (701)
T Consensus       154 ~~l~~~~~~i~~~lk~p~-~~k~p~~---------------------------------------------------v~~  181 (224)
T cd04165         154 NILQETLKDLKRILKVPG-VRKLPVP---------------------------------------------------VKS  181 (224)
T ss_pred             HHHHHHHHHHHHHHCCCC-CCCCCEE---------------------------------------------------CCC
T ss_conf             999999999999970447-5568702---------------------------------------------------168


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHCCEEECCEEEECCCCCEECCCCHHHHHHHHHHHCCCH
Q ss_conf             4578999863277899889873000003101003234310001221024889898717862
Q gi|254780264|r  227 LDDSAMDSYLQGESFSSDRIRSLIRLGTISVKFFPVLCGSSFKNKGVQPLLDAVVDYLPSP  287 (701)
Q Consensus       227 ~dd~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~pv~~gsa~~~~Gv~~LLd~i~~~lPsP  287 (701)
T Consensus       182 ~~d~~~~-----------------a~~~~~~~ivPIf~vS~VtG~Gi~~-L~~fL~~LP~r  224 (224)
T cd04165         182 DDDVVLA-----------------ASNFSSERIVPIFQVSNVTGEGLDL-LHAFLNLLPLR  224 (224)
T ss_pred             HHHHHHH-----------------HHCCCCCCCCCEEEEECCCCCCHHH-HHHHHHHCCCC
T ss_conf             5889999-----------------8648867774679976589879999-99999876999