HHsearch alignment for GI: 254780264 and conserved domain: cd04167
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=100.00 E-value=0 Score=401.37 Aligned_cols=151 Identities=30% Similarity=0.431 Sum_probs=141.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCC-CEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCC
Q ss_conf 279998687889778999999980873214220179-5613780889870853764079999607778713899981798
Q gi|254780264|r 11 RNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDG-SATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPG 89 (701)
Q Consensus 11 RNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g-~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPG 89 (701)
T Consensus 1 RNvaiigHvdhGKTTL~d~Ll~~t~~~~~~~~~~~~~~~~~D~~~~E~eRgiTI~s~~~sl~~~~~~~k~~~inlIDTPG 80 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPG 80 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCEECCEEEEEEECCCCCEEEEEEEECCC
T ss_conf 95999827898989999999997344555404442113575164665420355861459999825667505787788987
Q ss_pred CCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCCC
Q ss_conf 755289999999860456999955888883479999999873997899981767658755556664111102
Q gi|254780264|r 90 HVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKMGADFYRSVEMISSRLG 161 (701)
Q Consensus 90 H~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~~~d~~~~l~~i~~~l~ 161 (701)
T Consensus 81 H~dF~~ev~~al~~~DgailVVDa~eGv~~qT~~~l~~a~~~~l~~ilviNKiDRLi~el~l~p~day~~~~ 152 (213)
T cd04167 81 HVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRLILELKLPPNDAYFKLR 152 (213)
T ss_pred CHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHCCCCHHHHHHHHH
T ss_conf 241799999888637767999987888757799999999986999899998823431440699899999899