HHsearch alignment for GI: 254780264 and conserved domain: cd04172
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=98.31 E-value=7.6e-06 Score=56.28 Aligned_cols=113 Identities=13% Similarity=0.108 Sum_probs=76.0
Q ss_pred HEE-EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEE-EEEEEECCCCCCCEEEEEEE
Q ss_conf 252-7999868788977899999998087321422017956137808898708537640-79999607778713899981
Q gi|254780264|r 9 DSR-NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSA-STTVFWPGRDGGQKKLTIID 86 (701)
Q Consensus 9 ~iR-Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss-~~sl~~~~~~~~~~~iNlID 86 (701)
T Consensus 3 ~ik~KivlvGd~~VGKTsLi~r~~~--~~F~~----~----y~----------pTi~~~~~~~~~i---~~~~v~l~iwD 59 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAK--DCFPE----N----YV----------PTVFENYTASFEI---DTQRIELSLWD 59 (182)
T ss_pred CEEEEEEEECCCCCCHHHHHHHHHH--CCCCC----C----CC----------CEEEEEEEEEEEE---CCEEEEEEEEE
T ss_conf 3048999999999899999999983--99999----8----68----------7353226899999---99999999996
Q ss_pred CCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHH-HHHHHHHH---HCCCCEEEEECCCCC
Q ss_conf 79875528999999986045699995588888347-99999998---739978999817676
Q gi|254780264|r 87 TPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQT-ETVWRQAD---KYSVPRVIFCNKMDK 144 (701)
Q Consensus 87 TPGH~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT-~~vlr~~~---~~~lp~ilvINKiDr 144 (701)
T Consensus 60 TaGqe~f~~l~~~~y~~~~~~ilvydit~~~Sf~~v~~~W~~ei~~~~~~~~iiLVGnK~DL 121 (182)
T cd04172 60 TSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDL 121 (182)
T ss_pred CCCCHHCCCCCHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 89862012212555127878999964897788999999999999986879988999617101