HHsearch alignment for GI: 254780264 and conserved domain: pfam04670
>pfam04670 Gtr1_RagA Gtr1/RagA G protein conserved region. GTR1 was first identified in S. cerevisiae as a suppressor of a mutation in RCC1. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1. Included in this family is the human Rag C, a novel protein that has been shown to interact with RagA/B.
Probab=97.96 E-value=0.00022 Score=46.91 Aligned_cols=127 Identities=20% Similarity=0.246 Sum_probs=78.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCC
Q ss_conf 99986878897789999999808732142201795613780889870853764079999607778713899981798755
Q gi|254780264|r 13 FGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHVD 92 (701)
Q Consensus 13 v~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~D 92 (701)
T Consensus 2 iLLMG~~~sGKTSi~~-vIF~~~-~p-----------~dT~~----L~~T~~ve~~~v~~~----~~l~l~iwD~pGq~~ 60 (230)
T pfam04670 2 VLLMGLRGSGKSSMRS-IIFSNY-SP-----------RDTLR----LGATIDVEQSHVRFL----GNLTLNLWDCPGQDD 60 (230)
T ss_pred EEEECCCCCCHHHHHH-HHHCCC-CH-----------HHHCC----CCCCCCEEEEEEECC----CCCEEEEEECCCCHH
T ss_conf 7875689998777699-986799-82-----------14120----257777677877416----873689997698353
Q ss_pred CHHH-----HHHHHHHHCEEEEEEECCC-CCC---HHHHHHHHHHHH--CCCCEEEEECCCCCCCCCHHHH-HHHHCCCC
Q ss_conf 2899-----9999986045699995588-888---347999999987--3997899981767658755556-66411110
Q gi|254780264|r 93 FTME-----VERSIRVTDGAIALLDSNA-GVE---PQTETVWRQADK--YSVPRVIFCNKMDKMGADFYRS-VEMISSRL 160 (701)
Q Consensus 93 F~~E-----v~~aL~~~DgailvVDa~e-Gv~---~qT~~vlr~~~~--~~lp~ilvINKiDr~~~d~~~~-l~~i~~~l 160 (701)
T Consensus 61 f~e~~~~~~~e~if~~v~~lIyV~D~q~~~~~~~l~~~~~~l~~~~~~sp~~~v~vfiHK~D~l~~d~r~~~~~~~~~~i 140 (230)
T pfam04670 61 FMENYLTRQKEHIFSNVGVLIYVFDVESREYEEDLATLVKIIEALYQYSPNAKVFVLIHKMDLLSEDERKEIFEDRKEEI 140 (230)
T ss_pred HHHHHCCCCHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 54412002235476447889999968886099999999999999998399988999996035888667899999999999