HHsearch alignment for GI: 254780264 and conserved domain: pfam08477
>pfam08477 Miro Miro-like protein. Mitochondrial Rho proteins (Miro-1 and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis.
Probab=98.65 E-value=5.5e-07 Score=63.60 Aligned_cols=111 Identities=16% Similarity=0.208 Sum_probs=73.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCC
Q ss_conf 99986878897789999999808732142201795613780889870853764079999607778713899981798755
Q gi|254780264|r 13 FGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHVD 92 (701)
Q Consensus 13 v~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~D 92 (701)
T Consensus 2 ivvvG~~~vGKTSLi~r~~~~~f--~~--~~-----~~~------~~~~~~~~~~~~-----~~~~~~~l~i~Dt~g~~~ 61 (118)
T pfam08477 2 VVVIGDKGSGKSSLLSQLVGGEF--PP--EI-----PEE------IQGDTLAVDTLE-----VDGDTELLHIWDFGGREE 61 (118)
T ss_pred EEEECCCCCCHHHHHHHHHHCCC--CC--CC-----CCC------CCCCEEEEEEEE-----ECCCEEEEEEEECCCCHH
T ss_conf 99999899789999999983988--87--66-----678------777768889999-----999289999998999677
Q ss_pred CHHHHHHHHHHHCEEEEEEECCCCCCHHH-HHHHHH---HH--HCCCCEEEEECCCC
Q ss_conf 28999999986045699995588888347-999999---98--73997899981767
Q gi|254780264|r 93 FTMEVERSIRVTDGAIALLDSNAGVEPQT-ETVWRQ---AD--KYSVPRVIFCNKMD 143 (701)
Q Consensus 93 F~~Ev~~aL~~~DgailvVDa~eGv~~qT-~~vlr~---~~--~~~lp~ilvINKiD 143 (701)
T Consensus 62 ~~~~~~~~~~~~d~~ilvydit~~~Sf~~~~~~~~~i~~~~~~~~~~piilVGnK~D 118 (118)
T pfam08477 62 LKFEHIIFMKTADAILLVYDLTDRESLNRVSRLIAWLPHLRKLGKKIPVILVGNKFD 118 (118)
T ss_pred HHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCC
T ss_conf 766665422587467899979987899999999999999982099998899996859