HHsearch alignment for GI: 254780264 and conserved domain: smart00176

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.

Probab=98.32  E-value=8.5e-06  Score=55.95  Aligned_cols=108  Identities=24%  Similarity=0.304  Sum_probs=72.4

Q ss_pred             ECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCCCHH
Q ss_conf             86878897789999999808732142201795613780889870853764079999607778713899981798755289
Q gi|254780264|r   16 MAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHVDFTM   95 (701)
Q Consensus        16 iaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~DF~~   95 (701)
T Consensus         1 vGD~gVGKTsli~R~~--~~~F~~--------~y~----------pTiGvd~~~~~~~-~~~~~i~l~iWDTAGqE~f~s   59 (200)
T smart00176        1 VGDGGTGKTTFVKRHL--TGEFEK--------KYV----------ATLGVEVHPLVFH-TNRGPIRFNVWDTAGQEKFGG   59 (200)
T ss_pred             CCCCCCCHHHHHHHHH--CCCCCC--------CCC----------CCEEEEEEEEEEE-ECCEEEEEEEEECCCCCCCCC
T ss_conf             9898878999999994--099999--------978----------8714898999999-899899999998988700011


Q ss_pred             HHHHHHHHHCEEEEEEECCCCCCHHHHHHH-HHH--HHCCCCEEEEECCCCC
Q ss_conf             999999860456999955888883479999-999--8739978999817676
Q gi|254780264|r   96 EVERSIRVTDGAIALLDSNAGVEPQTETVW-RQA--DKYSVPRVIFCNKMDK  144 (701)
Q Consensus        96 Ev~~aL~~~DgailvVDa~eGv~~qT~~vl-r~~--~~~~lp~ilvINKiDr  144 (701)
T Consensus        60 l~~~yyr~a~~~IlvfDvt~~~SF~~l~~W~~~l~~~~~~ipiiLvGNK~DL  111 (200)
T smart00176       60 LRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDV  111 (200)
T ss_pred             CCHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf             0265505787889996358778999899999999985799988999988757