RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780264|ref|YP_003064677.1| elongation factor G
[Candidatus Liberibacter asiaticus str. psy62]
(701 letters)
>gnl|CDD|178789 PRK00007, PRK00007, elongation factor G; Reviewed.
Length = 693
Score = 1318 bits (3415), Expect = 0.0
Identities = 429/697 (61%), Positives = 526/697 (75%), Gaps = 6/697 (0%)
Query: 1 MARKCKIEDSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERG 60
MAR+ +E RN GIMAHIDAGKTTTTERIL+Y G +HKIGEVHDG+ATMDWMEQEQERG
Sbjct: 1 MARETPLERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERG 60
Query: 61 ITITSASTTVFWPGRDGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQ 120
ITITSA+TT FW ++ IIDTPGHVDFT+EVERS+RV DGA+A+ D+ GVEPQ
Sbjct: 61 ITITSAATTCFWKD-----HRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQ 115
Query: 121 TETVWRQADKYSVPRVIFCNKMDKMGADFYRSVEMISSRLGANPLVIQLPVGSESNFQGV 180
+ETVWRQADKY VPR+ F NKMD+ GADFYR VE I RLGANP+ IQLP+G+E +F+GV
Sbjct: 116 SETVWRQADKYKVPRIAFVNKMDRTGADFYRVVEQIKDRLGANPVPIQLPIGAEDDFKGV 175
Query: 181 IDLVEMKALLWKNEDLGSSWDVVEIPEDMKDSANSYRDKMIESIVELDDSAMDSYLQGES 240
+DLV+MKA++W DLG++++ EIP D+KD A YR+K+IE+ E D+ M+ YL+GE
Sbjct: 176 VDLVKMKAIIWNEADLGATFEYEEIPADLKDKAEEYREKLIEAAAEADEELMEKYLEGEE 235
Query: 241 FSSDRIRSLIRLGTISVKFFPVLCGSSFKNKGVQPLLDAVVDYLPSPLDVRAIKGVDVKS 300
+ + I++ +R TI+ + PVLCGS+FKNKGVQPLLDAVVDYLPSPLDV AIKG+
Sbjct: 236 LTEEEIKAALRKATIANEIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGILPDG 295
Query: 301 NS-EIDVSAVDSSPLSMLAFKVMADSFVGSLTFCRIYSGKISKGDSLLNTVKGKKERVGR 359
E++ A D P S LAFK+M D FVG LTF R+YSG + G +LN+ KGKKER+GR
Sbjct: 296 EEEEVERKASDDEPFSALAFKIMTDPFVGKLTFFRVYSGVLESGSYVLNSTKGKKERIGR 355
Query: 360 MLQMHSNSREDIDEAYCGDIIALAGLKETTTGDTLCDPSRPIVLERMDFPEPVIQIAIEP 419
+LQMH+N RE+I E GDI A GLK+TTTGDTLCD PI+LE M+FPEPVI +A+EP
Sbjct: 356 ILQMHANKREEIKEVRAGDIAAAVGLKDTTTGDTLCDEKNPIILESMEFPEPVISVAVEP 415
Query: 420 KSKGDQERMSLALSRLVAEDPSLRVSMDPNSGQTNLSGMGELHLEIIVDRMLREFKVDAN 479
K+K DQE+M +AL +L EDPS RVS D +GQT ++GMGELHL+IIVDRM REFKV+AN
Sbjct: 416 KTKADQEKMGIALQKLAEEDPSFRVSTDEETGQTIIAGMGELHLDIIVDRMKREFKVEAN 475
Query: 480 VGAPYVSYRESVTKSCVHDYIHKKQSGGAGQFAKVKIAFEPNPDGDDFVFESKIVGGAIP 539
VG P V+YRE++ K + KQSGG GQ+ V I FEPN G + F +KIVGG IP
Sbjct: 476 VGKPQVAYRETIRKKVEVEGKFVKQSGGRGQYGHVVIEFEPNEPGKGYEFVNKIVGGVIP 535
Query: 540 KEYIPGVRKGIESMLSSGPLAGFPMLGMKVTLLDGDYHDVDSSVLAFEIAARACFREAAS 599
KEYIP V KGI+ + SG LAG+P++ +KVTL DG YHDVDSS +AF+IA F+EAA
Sbjct: 536 KEYIPAVDKGIQEAMESGVLAGYPVVDVKVTLFDGSYHDVDSSEMAFKIAGSMAFKEAAK 595
Query: 600 KMGVQLLEPLMKVEVTVPAEYVGDVIGDLSSRRGQIQGQENRSVYVVIDAHVPLSCMFKY 659
K LLEP+MKVEV P EY+GDVIGDL+SRRGQI+G E+R VI A VPLS MF Y
Sbjct: 596 KANPVLLEPIMKVEVVTPEEYMGDVIGDLNSRRGQIEGMEDRGGAKVIRAEVPLSEMFGY 655
Query: 660 VDSLRSMSQGRGQYTMIFDHYAPVPAHVSKEIQEKYS 696
LRSM+QGR Y+M FDHY VP +V++EI +K
Sbjct: 656 ATDLRSMTQGRATYSMEFDHYEEVPKNVAEEIIKKRK 692
>gnl|CDD|183712 PRK12739, PRK12739, elongation factor G; Reviewed.
Length = 691
Score = 1251 bits (3240), Expect = 0.0
Identities = 432/692 (62%), Positives = 540/692 (78%), Gaps = 5/692 (0%)
Query: 3 RKCKIEDSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGIT 62
R+ +E +RN GIMAHIDAGKTTTTERILYY GKSHKIGEVHDG+ATMDWMEQEQERGIT
Sbjct: 1 REFPLEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGIT 60
Query: 63 ITSASTTVFWPGRDGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTE 122
ITSA+TT FW G ++ IIDTPGHVDFT+EVERS+RV DGA+A+ D+ +GVEPQ+E
Sbjct: 61 ITSAATTCFWKG-----HRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSE 115
Query: 123 TVWRQADKYSVPRVIFCNKMDKMGADFYRSVEMISSRLGANPLVIQLPVGSESNFQGVID 182
TVWRQADKY VPR++F NKMD++GADF+RSVE I RLGAN + IQLP+G+E +F+GVID
Sbjct: 116 TVWRQADKYGVPRIVFVNKMDRIGADFFRSVEQIKDRLGANAVPIQLPIGAEDDFKGVID 175
Query: 183 LVEMKALLWKNEDLGSSWDVVEIPEDMKDSANSYRDKMIESIVELDDSAMDSYLQGESFS 242
L++MKA++W +E LG+ ++ +IP D+K+ A YR+K+IE++ E+D+ M+ YL+GE +
Sbjct: 176 LIKMKAIIWDDETLGAKYEEEDIPADLKEKAEEYREKLIEAVAEVDEELMEKYLEGEEIT 235
Query: 243 SDRIRSLIRLGTISVKFFPVLCGSSFKNKGVQPLLDAVVDYLPSPLDVRAIKGVDVKSNS 302
+ I++ IR TI+++FFPVLCGS+FKNKGVQPLLDAVVDYLPSPLDV AIKG++ +
Sbjct: 236 EEEIKAAIRKATINMEFFPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGINPDTEE 295
Query: 303 EIDVSAVDSSPLSMLAFKVMADSFVGSLTFCRIYSGKISKGDSLLNTVKGKKERVGRMLQ 362
EI+ A D P + LAFK+M D FVG LTF R+YSG + G +LNT KGKKER+GR+LQ
Sbjct: 296 EIERPASDDEPFAALAFKIMTDPFVGRLTFFRVYSGVLESGSYVLNTTKGKKERIGRLLQ 355
Query: 363 MHSNSREDIDEAYCGDIIALAGLKETTTGDTLCDPSRPIVLERMDFPEPVIQIAIEPKSK 422
MH+N RE+I E Y GDI A GLK+TTTGDTLCD PI+LE M+FPEPVI +A+EPK+K
Sbjct: 356 MHANKREEIKEVYAGDIAAAVGLKDTTTGDTLCDEKAPIILESMEFPEPVISLAVEPKTK 415
Query: 423 GDQERMSLALSRLVAEDPSLRVSMDPNSGQTNLSGMGELHLEIIVDRMLREFKVDANVGA 482
DQ++M LAL +L EDP+ RV D +GQT +SGMGELHL+IIVDRM REFKV+ANVGA
Sbjct: 416 ADQDKMGLALQKLAEEDPTFRVETDEETGQTIISGMGELHLDIIVDRMKREFKVEANVGA 475
Query: 483 PYVSYRESVTKSCVHDYIHKKQSGGAGQFAKVKIAFEPNPDGDDFVFESKIVGGAIPKEY 542
P V+YRE++TKS + +KKQSGG GQ+ V I FEPN +G F F +KIVGG IPKEY
Sbjct: 476 PQVAYRETITKSVEAEGKYKKQSGGRGQYGDVWIEFEPNEEGKGFEFVNKIVGGVIPKEY 535
Query: 543 IPGVRKGIESMLSSGPLAGFPMLGMKVTLLDGDYHDVDSSVLAFEIAARACFREAASKMG 602
IP V KG+E + +G LAG+PM+ +K TL DG YHDVDSS LAF+IAA +EAA K G
Sbjct: 536 IPAVEKGLEEAMKNGVLAGYPMVDVKATLYDGSYHDVDSSELAFKIAASMALKEAAKKAG 595
Query: 603 VQLLEPLMKVEVTVPAEYVGDVIGDLSSRRGQIQGQENRSVYVVIDAHVPLSCMFKYVDS 662
+LEP+MKVEV P EY+GDVIGDL+ RRGQIQG E R ++ A VPLS MF Y
Sbjct: 596 PVILEPIMKVEVVTPEEYMGDVIGDLNRRRGQIQGMEARGGAQIVKAFVPLSEMFGYATD 655
Query: 663 LRSMSQGRGQYTMIFDHYAPVPAHVSKEIQEK 694
LRS +QGR ++M FDHY VP ++++EI +K
Sbjct: 656 LRSATQGRATFSMEFDHYEEVPKNIAEEIIKK 687
>gnl|CDD|129575 TIGR00484, EF-G, translation elongation factor EF-G. After peptide
bond formation, this elongation factor of bacteria and
organelles catalyzes the translocation of the tRNA-mRNA
complex, with its attached nascent polypeptide chain,
from the A-site to the P-site of the ribosome. Every
completed bacterial genome has at least one copy, but
some species have additional EF-G-like proteins. The
closest homolog to canonical (e.g. E. coli) EF-G in the
spirochetes clusters as if it is derived from
mitochondrial forms, while a more distant second copy is
also present. Synechocystis PCC6803 has a few proteins
more closely related to EF-G than to any other
characterized protein. Two of these resemble E. coli
EF-G more closely than does the best match from the
spirochetes; it may be that both function as authentic
EF-G.
Length = 689
Score = 1009 bits (2610), Expect = 0.0
Identities = 411/694 (59%), Positives = 510/694 (73%), Gaps = 7/694 (1%)
Query: 1 MARKCKIEDSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERG 60
MAR + RN GI AHIDAGKTTTTERIL+Y G+ HKIGEVHDG+ATMDWMEQE+ERG
Sbjct: 1 MARTTDLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERG 60
Query: 61 ITITSASTTVFWPGRDGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQ 120
ITITSA+TTVFW G ++ IIDTPGHVDFT+EVERS+RV DGA+A+LD+ GV+PQ
Sbjct: 61 ITITSAATTVFWKGH-----RINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQ 115
Query: 121 TETVWRQADKYSVPRVIFCNKMDKMGADFYRSVEMISSRLGANPLVIQLPVGSESNFQGV 180
+ETVWRQA++Y VPR+ F NKMDK GA+F R V I RLGAN + IQLP+G+E NF GV
Sbjct: 116 SETVWRQANRYEVPRIAFVNKMDKTGANFLRVVNQIKQRLGANAVPIQLPIGAEDNFIGV 175
Query: 181 IDLVEMKALLWKNEDLGSSWDVVEIPEDMKDSANSYRDKMIESIVELDDSAMDSYLQGES 240
IDLVEMKA + N D G+ EIP D+ + A R+ ++E++ E D+ M+ YL+GE
Sbjct: 176 IDLVEMKAYFF-NGDKGTKAIEKEIPSDLLEQAKELRENLVEAVAEFDEELMEKYLEGEE 234
Query: 241 FSSDRIRSLIRLGTISVKFFPVLCGSSFKNKGVQPLLDAVVDYLPSPLDVRAIKGVDVKS 300
+ + I++ IR G ++ +FFPVLCGS+FKNKGVQ LLDAVVDYLPSP DV AIKG+D +
Sbjct: 235 LTIEEIKNAIRKGVLNCEFFPVLCGSAFKNKGVQLLLDAVVDYLPSPTDVPAIKGIDPDT 294
Query: 301 NSEIDVSAVDSSPLSMLAFKVMADSFVGSLTFCRIYSGKISKGDSLLNTVKGKKERVGRM 360
EI+ A D P S LAFKV D FVG LTF R+YSG + G + N+ K KKERVGR+
Sbjct: 295 EKEIERKASDDEPFSALAFKVATDPFVGQLTFVRVYSGVLKSGSYVKNSRKNKKERVGRL 354
Query: 361 LQMHSNSREDIDEAYCGDIIALAGLKETTTGDTLCDPSRPIVLERMDFPEPVIQIAIEPK 420
++MH+N+RE+I E GDI A GLK+TTTGDTLCDP ++LERM+FPEPVI +A+EPK
Sbjct: 355 VKMHANNREEIKEVRAGDICAAIGLKDTTTGDTLCDPKIDVILERMEFPEPVISLAVEPK 414
Query: 421 SKGDQERMSLALSRLVAEDPSLRVSMDPNSGQTNLSGMGELHLEIIVDRMLREFKVDANV 480
+K DQE+M +AL +L EDP+ R DP +GQT ++GMGELHL+IIVDRM REFKV+ANV
Sbjct: 415 TKADQEKMGIALGKLAEEDPTFRTFTDPETGQTIIAGMGELHLDIIVDRMKREFKVEANV 474
Query: 481 GAPYVSYRESVTKSCVHDYIHKKQSGGAGQFAKVKIAFEPNPDGDDFVFESKIVGGAIPK 540
GAP V+YRE++ + H KQSGG GQ+ VKI FEP + F ++I GG IP+
Sbjct: 475 GAPQVAYRETIRSKVEVEGKHAKQSGGRGQYGHVKIRFEPLEPK-GYEFVNEIKGGVIPR 533
Query: 541 EYIPGVRKGIESMLSSGPLAGFPMLGMKVTLLDGDYHDVDSSVLAFEIAARACFREAASK 600
EYIP V KG++ + SGPLAG+P++ +K TL DG YHDVDSS +AF++AA F+EA K
Sbjct: 534 EYIPAVDKGLQEAMESGPLAGYPVVDIKATLFDGSYHDVDSSEMAFKLAASLAFKEAGKK 593
Query: 601 MGVQLLEPLMKVEVTVPAEYVGDVIGDLSSRRGQIQGQENRSVYVVIDAHVPLSCMFKYV 660
LLEP+MKVEV VP EY+GDV+GDLSSRRG I+G E R I A VPLS MF Y
Sbjct: 594 ANPVLLEPIMKVEVEVPEEYMGDVMGDLSSRRGIIEGMEARGNVQKIKAEVPLSEMFGYA 653
Query: 661 DSLRSMSQGRGQYTMIFDHYAPVPAHVSKEIQEK 694
LRS +QGRG Y+M F HY VP+ V+ EI EK
Sbjct: 654 TDLRSFTQGRGTYSMEFLHYGEVPSSVANEIIEK 687
>gnl|CDD|183713 PRK12740, PRK12740, elongation factor G; Reviewed.
Length = 668
Score = 999 bits (2585), Expect = 0.0
Identities = 361/678 (53%), Positives = 476/678 (70%), Gaps = 10/678 (1%)
Query: 16 MAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGR 75
+ H AGKTT TE IL+Y G H+IGEV DG+ TMD+M +E+ERGI+ITSA+TT W G
Sbjct: 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKG- 59
Query: 76 DGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPR 135
K+ +IDTPGHVDFT EVER++RV DGA+ ++ + GVEPQTETVWRQA+KY VPR
Sbjct: 60 ----HKINLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPR 115
Query: 136 VIFCNKMDKMGADFYRSVEMISSRLGANPLVIQLPVGSESNFQGVIDLVEMKALLWKNED 195
+IF NKMD+ GADF+R + + +LGA + +QLP+G +F GV+DL+ MKA + D
Sbjct: 116 IIFVNKMDRAGADFFRVLAQLQEKLGAPVVPLQLPIGEGDDFTGVVDLLSMKAYRY---D 172
Query: 196 LGSSWDVVEIPEDMKDSANSYRDKMIESIVELDDSAMDSYLQGESFSSDRIRSLIRLGTI 255
G + +EIP ++ D A R++++E++ E DD M+ YL+GE S + I++ +R T+
Sbjct: 173 EGGPSEEIEIPAELLDRAEEAREELLEALAEFDDELMEKYLEGEELSEEEIKAGLRKATL 232
Query: 256 SVKFFPVLCGSSFKNKGVQPLLDAVVDYLPSPLDVRAIKGVDVKSNSEIDVSAVDSSPLS 315
+ + PV CGS+ KNKGVQ LLDAVVDYLPSPL+V + G D + +E+ PL
Sbjct: 233 AGEIVPVFCGSALKNKGVQRLLDAVVDYLPSPLEVPPVDGEDGEEGAELAPDP--DGPLV 290
Query: 316 MLAFKVMADSFVGSLTFCRIYSGKISKGDSLLNTVKGKKERVGRMLQMHSNSREDIDEAY 375
L FK M D FVG L+ R+YSG + KGD+L N+ GKKERVGR+ +MH RE++DEA
Sbjct: 291 ALVFKTMDDPFVGKLSLVRVYSGTLKKGDTLYNSGTGKKERVGRLYRMHGKQREEVDEAV 350
Query: 376 CGDIIALAGLKETTTGDTLCDPSRPIVLERMDFPEPVIQIAIEPKSKGDQERMSLALSRL 435
GDI+A+A LK+ TGDTLCD PI+LE M+FPEPVI +AIEPK KGD+E++S AL +L
Sbjct: 351 AGDIVAVAKLKDAATGDTLCDKGDPILLEPMEFPEPVISLAIEPKDKGDEEKLSEALGKL 410
Query: 436 VAEDPSLRVSMDPNSGQTNLSGMGELHLEIIVDRMLREFKVDANVGAPYVSYRESVTKSC 495
EDP+LRV D +GQT LSGMGELHL++ ++R+ RE+ V+ G P V YRE++ K
Sbjct: 411 AEEDPTLRVERDEETGQTILSGMGELHLDVALERLKREYGVEVETGPPQVPYRETIRKKA 470
Query: 496 VHDYIHKKQSGGAGQFAKVKIAFEPNPDGDDFVFESKIVGGAIPKEYIPGVRKGIESMLS 555
HKKQSGG GQF V + EP P G+ F F K+VGGA+P++YIP V KG+ L
Sbjct: 471 EGHGRHKKQSGGHGQFGDVWLEVEPLPRGEGFEFVDKVVGGAVPRQYIPAVEKGVREALE 530
Query: 556 SGPLAGFPMLGMKVTLLDGDYHDVDSSVLAFEIAARACFREAASKMGVQLLEPLMKVEVT 615
G LAG+P++ +KVTL DG YH VDSS +AF+IAAR FREA K LLEP+MKVEV+
Sbjct: 531 KGVLAGYPVVDVKVTLTDGSYHSVDSSEMAFKIAARLAFREALPKAKPVLLEPIMKVEVS 590
Query: 616 VPAEYVGDVIGDLSSRRGQIQGQENRSVYVVIDAHVPLSCMFKYVDSLRSMSQGRGQYTM 675
VP E+VGDVIGDLSSRRG+I G E+R V+ A VPL+ MF Y LRS++QGRG ++M
Sbjct: 591 VPEEFVGDVIGDLSSRRGRILGMESRGGGDVVRAEVPLAEMFGYATDLRSLTQGRGSFSM 650
Query: 676 IFDHYAPVPAHVSKEIQE 693
F HY VP +V++++
Sbjct: 651 EFSHYEEVPGNVAEKVIA 668
>gnl|CDD|183990 PRK13351, PRK13351, elongation factor G; Reviewed.
Length = 687
Score = 934 bits (2417), Expect = 0.0
Identities = 356/685 (51%), Positives = 477/685 (69%), Gaps = 7/685 (1%)
Query: 11 RNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTV 70
RN GI+AHIDAGKTT TERIL+Y GK HK+GEV DG+ DWM QEQERGITI SA+T+
Sbjct: 9 RNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSC 68
Query: 71 FWPGRDGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADK 130
W + +IDTPGH+DFT EVERS+RV DGA+ + D+ GV+PQTETVWRQAD+
Sbjct: 69 DWDNHR-----INLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADR 123
Query: 131 YSVPRVIFCNKMDKMGADFYRSVEMISSRLGANPLVIQLPVGSESNFQGVIDLVEMKALL 190
Y +PR+IF NKMD++GAD ++ +E I R G PL +QLP+GSE F+GV+DL+ L
Sbjct: 124 YGIPRLIFINKMDRVGADLFKVLEDIEERFGKRPLPLQLPIGSEDGFEGVVDLITEPELH 183
Query: 191 WKNEDLGSSWDVVEIPEDMKDSANSYRDKMIESIVELDDSAMDSYLQGESFSSDRIRSLI 250
+ D GS+ + IPE++ + R+K+IE++ E DD ++ YL+GE S++++R+ +
Sbjct: 184 FSEGDGGSTVEEGPIPEELLEEVEEAREKLIEALAEFDDELLELYLEGEELSAEQLRAPL 243
Query: 251 RLGTISVKFFPVLCGSSFKNKGVQPLLDAVVDYLPSPLDVRAIKGVDVKSNSEIDVSAVD 310
R GT S PVL GS+ KN G++PLLDAVVDYLPSPL+V +G + + V
Sbjct: 244 REGTRSGHLVPVLFGSALKNIGIEPLLDAVVDYLPSPLEVPPPRGSK-DNGKPVKVDPDP 302
Query: 311 SSPLSMLAFKVMADSFVGSLTFCRIYSGKISKGDSLLNTVKGKKERVGRMLQMHSNSRED 370
PL L FKV D + G LT+ R+YSG + G L N GK+E+VGR+ ++ N RE+
Sbjct: 303 EKPLLALVFKVQYDPYAGKLTYLRVYSGTLRAGSQLYNGTGGKREKVGRLFRLQGNKREE 362
Query: 371 IDEAYCGDIIALAGLKETTTGDTLCDPSRPIVLERMDFPEPVIQIAIEPKSKGDQERMSL 430
+D A GDI+A+AGLKE TGDTL D + P++LE + FPEPV+ +A+EP+ +GD+++++
Sbjct: 363 VDRAKAGDIVAVAGLKELETGDTLHDSADPVLLELLTFPEPVVSLAVEPERRGDEQKLAE 422
Query: 431 ALSRLVAEDPSLRVSMDPNSGQTNLSGMGELHLEIIVDRMLREFKVDANVGAPYVSYRES 490
AL +LV EDPSLRV D +GQT LSGMGELHLE+ ++R+ REFK++ N G P V+YRE+
Sbjct: 423 ALEKLVWEDPSLRVEEDEETGQTILSGMGELHLEVALERLRREFKLEVNTGKPQVAYRET 482
Query: 491 VTKSCVHDYIHKKQSGGAGQFAKVKIAFEPNPDGDDFVFESKIVGGAIPKEYIPGVRKGI 550
+ K Y HKKQ GG GQF +V + EP G F+F SK+VGGAIP+E IP V KGI
Sbjct: 483 IRKMAEGVYRHKKQFGGKGQFGEVHLRVEPLERGAGFIFVSKVVGGAIPEELIPAVEKGI 542
Query: 551 ESMLSSGPLAGFPMLGMKVTLLDGDYHDVDSSVLAFEIAARACFREAASKMGVQLLEPLM 610
L+SGPLAG+P+ ++VT+LDG YH VDSS AF+ AAR F EA K LLEP+M
Sbjct: 543 REALASGPLAGYPVTDLRVTVLDGKYHPVDSSESAFKAAARKAFLEAFRKANPVLLEPIM 602
Query: 611 KVEVTVPAEYVGDVIGDLSSRRGQIQGQENRSVY-VVIDAHVPLSCMFKYVDSLRSMSQG 669
++E+TVP E+VGDV+GDLS RRG+I+G E R V++ A PL+ +F Y LRSM++G
Sbjct: 603 ELEITVPTEHVGDVLGDLSQRRGRIEGTEPRGDGEVLVKAEAPLAELFGYATRLRSMTKG 662
Query: 670 RGQYTMIFDHYAPVPAHVSKEIQEK 694
RG +TM F H+ PVP V K++ K
Sbjct: 663 RGSFTMEFSHFDPVPPAVQKKVGSK 687
>gnl|CDD|185604 PTZ00416, PTZ00416, elongation factor 2; Provisional.
Length = 836
Score = 207 bits (529), Expect = 7e-54
Identities = 204/799 (25%), Positives = 351/799 (43%), Gaps = 144/799 (18%)
Query: 11 RNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSAT-MDWMEQEQERGITITSASTT 69
RN ++AH+D GK+T T+ ++ AG I + G A D EQERGITI S +
Sbjct: 20 RNMSVIAHVDHGKSTLTDSLVCKAGI---ISSKNAGDARFTDTRADEQERGITIKSTGIS 76
Query: 70 VF--WPGRDGGQKK---LTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETV 124
++ DG K+ + +ID+PGHVDF+ EV ++RVTDGA+ ++D GV QTETV
Sbjct: 77 LYYEHDLEDGDDKQPFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETV 136
Query: 125 WRQADKYSVPRVIFCNKMD------KMGAD-----FYRSVEMISSRLGA--NPLVIQLPV 171
RQA + + V+F NK+D ++ + F +++E ++ + + L+ + V
Sbjct: 137 LRQALQERIRPVLFINKVDRAILELQLDPEEIYQNFVKTIENVNVIIATYNDELMGDVQV 196
Query: 172 GSE-------SNFQG----------------VIDLVEMKALLWKN---EDLGSSWDVVEI 205
E S QG ++ +M LW + + W E
Sbjct: 197 YPEKGTVAFGSGLQGWAFTLTTFARIYAKKFGVEESKMMERLWGDNFFDAKTKKWIKDET 256
Query: 206 PEDMKDSANSYRDKMIESIVELDDSAMDSYLQGESFSSDRIRSLIRLGTISVKFFPVLCG 265
K ++ +++ I +L D+ M+ ++ + L ++++ L G
Sbjct: 257 NAQGKKLKRAFCQFILDPICQLFDAVMN-------EDKEKYDKM--LKSLNIS----LTG 303
Query: 266 SSFKNKGVQPLLDAV---------------VDYLPSPLDVRAIKGVDVKSNSEIDVSAV- 309
+ G +PLL AV VD+LPSP + + + ++ D +A
Sbjct: 304 EDKELTG-KPLLKAVMQKWLPAADTLLEMIVDHLPSPKEAQKYRVENLYEGPMDDEAANA 362
Query: 310 ----DS-SPLSMLAFKVMADSFVGSL-TFCRIYSGKISKGDSLL----NTVKGKKE---- 355
D PL M K++ S G F R++SG ++ G + N V GKKE
Sbjct: 363 IRNCDPNGPLMMYISKMVPTSDKGRFYAFGRVFSGTVATGQKVRIQGPNYVPGKKEDLFE 422
Query: 356 -RVGRMLQMHSNSREDIDEAYCGDIIALAGLKE--TTTGDTLCDPSRPIVLERMDFP-EP 411
+ R + M E I++ CG+ + L G+ + +G T+ + M + P
Sbjct: 423 KNIQRTVLMMGRYVEQIEDVPCGNTVGLVGVDQYLVKSG-TITTSETAHNIRDMKYSVSP 481
Query: 412 VIQIAIEPKSKGDQERMSLALSRLVAEDPSLRVSMDPNSGQTNLSGMGELHLEIIVDRML 471
V+++A+EPK+ D ++ L RL DP + + + SG+ ++G GELH+EI + +
Sbjct: 482 VVRVAVEPKNPKDLPKLVEGLKRLAKSDPLVVCTTE-ESGEHIVAGCGELHVEICLKDLE 540
Query: 472 REF-KVDANVGAPYVSYRESVT----KSCV------HDYIHKK----QSGGAGQFAKVKI 516
++ +D V P VSYRE+VT ++C+ H+ ++ K A + K+
Sbjct: 541 DDYANIDIIVSDPVVSYRETVTEESSQTCLSKSPNKHNRLYMKAEPLTEELAEAIEEGKV 600
Query: 517 AFEPNPDG------DDFVFESK-----------------IVGGAIPKEYIPGVRKGIESM 553
E +P D + ++ +V +Y+ ++ S
Sbjct: 601 GPEDDPKERANFLADKYEWDKNDARKIWCFGPENKGPNVLVDVTKGVQYMNEIKDSCVSA 660
Query: 554 LS----SGPLAGFPMLGMKVTLLDGDYHDVDSSVLAFEI--AARACFREAASKMGVQLLE 607
G L M G++ +LD H A +I AR F +LLE
Sbjct: 661 FQWATKEGVLCDENMRGIRFNILDVTLHADAIHRGAGQIIPTARRVFYACELTASPRLLE 720
Query: 608 PLMKVEVTVPAEYVGDVIGDLSSRRGQIQGQENRS--VYVVIDAHVPLSCMFKYVDSLRS 665
P+ V++T P + +G + L+ RRG + G+E R I A++P++ F + +LR+
Sbjct: 721 PMFLVDITAPEDAMGGIYSVLNRRRGVVIGEEQRPGTPLSNIKAYLPVAESFGFTAALRA 780
Query: 666 MSQGRGQYTMIFDHYAPVP 684
+ G+ +FDH+ VP
Sbjct: 781 ATSGQAFPQCVFDHWQVVP 799
>gnl|CDD|129581 TIGR00490, aEF-2, translation elongation factor aEF-2. This model
represents archaeal elongation factor 2, a protein more
similar to eukaryotic EF-2 than to bacterial EF-G, both
in sequence similarity and in sharing with eukaryotes
the property of having a diphthamide (modified His)
residue at a conserved position. The diphthamide can be
ADP-ribosylated by diphtheria toxin in the presence of
NAD.
Length = 720
Score = 193 bits (491), Expect = 2e-49
Identities = 118/469 (25%), Positives = 212/469 (45%), Gaps = 56/469 (11%)
Query: 274 QPLLDAVVDYLPSPLDVRAIKGVDVKS---NSEIDVSAVDSSP---LSMLAFKVMADSFV 327
Q +LD V+ +LPSP++ + + + NSE+ + ++ P L+++ K++ D
Sbjct: 244 QVVLDMVIRHLPSPIEAQKYRIPVIWKGDLNSEVGKAMLNCDPKGPLALMITKIVVDKHA 303
Query: 328 GSLTFCRIYSGKISKGDSLLNTVKGKKERVGRMLQMHSNSREDIDEAYCGDIIALAGLKE 387
G + R+YSG I G + + K R+ ++ R ++DE G+I+A+ GLK+
Sbjct: 304 GEVAVGRLYSGTIRPGMEVYIVDRKAKARIQQVGVYMGPERVEVDEIPAGNIVAVIGLKD 363
Query: 388 TTTGDTLCDPSRPIV-LERMD-FPEPVIQIAIEPKSKGDQERMSLALSRLVAEDPSLRVS 445
G+T+C I E + EPV+ +AIE K+ D ++ L ++ EDP++ V
Sbjct: 364 AVAGETICTTVENITPFESIKHISEPVVTVAIEAKNTKDLPKLIEVLRQVAKEDPTVHVE 423
Query: 446 MDPNSGQTNLSGMGELHLEIIVDRMLREFKVDANVGAPYVSYRESVTKSCVHDYIHKKQS 505
++ +G+ +SGMGELHLEIIV+++ ++ +D P V YRE+VT + +
Sbjct: 424 INEETGEHLISGMGELHLEIIVEKIREDYGLDVETSPPIVVYRETVTGTS-----PVVEG 478
Query: 506 GGAGQFAKVKIAFEPNPDG------DDFVFESKIVGGAIPKEYIPG-------------- 545
+ + I EP + + + + K+ + I
Sbjct: 479 KSPNKHNRFYIVVEPLEESVIQAFKEGKIVDMKMKKKERRRLLIEAGMDSEEAARVEEYY 538
Query: 546 -------VRKGI--------------ESMLSSGPLAGFPMLGMKVTLLDGDYHD--VDSS 582
+ +GI + +GP+A +G+KV L+D H+ V
Sbjct: 539 EGNLFINMTRGIQYLDETKELILEGFREAMRNGPIAREKCMGVKVKLMDAKLHEDAVHRG 598
Query: 583 VLAFEIAARACFREAASKMGVQLLEPLMKVEVTVPAEYVGDVIGDLSSRRGQIQGQENRS 642
A R+ A + LLEP KV + VP + +G ++ +RRGQI +
Sbjct: 599 PAQVIPAVRSGIFAAMMQAKPVLLEPYQKVFINVPQDMMGAATREIQNRRGQILEMKQEG 658
Query: 643 VYVVIDAHVPLSCMFKYVDSLRSMSQGRGQYTMIFDHYAPVPAHVSKEI 691
V I A P++ MF + ++R + GR ++ + VP ++ +E
Sbjct: 659 DMVTIIAKAPVAEMFGFAGAIRGATSGRCLWSTEHAGFELVPQNLQQEF 707
Score = 119 bits (299), Expect = 3e-27
Identities = 64/150 (42%), Positives = 95/150 (63%), Gaps = 3/150 (2%)
Query: 11 RNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTV 70
RN GI+AHID GKTT ++ +L AG + E+ +D+ EQEQERGITI +A+ ++
Sbjct: 20 RNIGIVAHIDHGKTTLSDNLLAGAGMISE--ELAGQQLYLDFDEQEQERGITINAANVSM 77
Query: 71 FWPGRDGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADK 130
+G + + +IDTPGHVDF +V R++R DGAI ++ + GV PQTETV RQA K
Sbjct: 78 VHE-YEGNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALK 136
Query: 131 YSVPRVIFCNKMDKMGADFYRSVEMISSRL 160
+V V+F NK+D++ + + + + R
Sbjct: 137 ENVKPVLFINKVDRLINELKLTPQELQERF 166
>gnl|CDD|179105 PRK00741, prfC, peptide chain release factor 3; Provisional.
Length = 526
Score = 170 bits (434), Expect = 1e-42
Identities = 130/414 (31%), Positives = 193/414 (46%), Gaps = 70/414 (16%)
Query: 7 IEDSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEV-------HDGSATMDWMEQEQER 59
+ R F I++H DAGKTT TE++L + G + G V H AT DWME E++R
Sbjct: 7 VAKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRH---ATSDWMEMEKQR 63
Query: 60 GITITSASTTV--FWPGRDGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGV 117
GI++TS +V F P RD + ++DTPGH DF+ + R++ D A+ ++D+ GV
Sbjct: 64 GISVTS---SVMQF-PYRD---CLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGV 116
Query: 118 EPQTET---VWRQADKYSVPRVIFCNKMDKMGADFYRSVEMISSRLGANPLVIQLPVGSE 174
EPQT V R D P F NK+D+ G + ++ I LG I P+G
Sbjct: 117 EPQTRKLMEVCRLRD---TPIFTFINKLDRDGREPLELLDEIEEVLGIACAPITWPIGMG 173
Query: 175 SNFQGVIDLVEMKALLWKNEDLGSSWDVVEIPEDMKDSANSYRDKMIESIVELDDSAMDS 234
F+GV DL + L++ + + +V I K N D+++ +L + +
Sbjct: 174 KRFKGVYDLYNDEVELYQPGEGHTIQEVEII----KGLDNPELDELLGE--DLAEQLREE 227
Query: 235 --YLQGES--FSSDRIRSLIRLGTISVKFFPVLCGSSFKNKGVQPLLDAVVDYLPSPLDV 290
+QG S F + + G ++ PV GS+ N GVQ LDA V++ P+P
Sbjct: 228 LELVQGASNEFDLEAFLA----GELT----PVFFGSALNNFGVQEFLDAFVEWAPAPQP- 278
Query: 291 RAIKGVDVKSNSEIDVSAVDSSPLSMLAFKVMA-------DSFVGSLTFCRIYSGKISKG 343
+ E +V + S FK+ A D + F R+ SGK KG
Sbjct: 279 --------RQTDEREVEPTE-EKFSGFVFKIQANMDPKHRD----RIAFVRVCSGKFEKG 325
Query: 344 DSLLNTVKGKKERVGRMLQMHSNSREDIDEAYCGDIIALAGLKETTT---GDTL 394
+ + GK R+ L + RE ++EAY GDII GL T GDT
Sbjct: 326 MKVRHVRTGKDVRISNALTFMAQDREHVEEAYAGDII---GLHNHGTIQIGDTF 376
>gnl|CDD|129594 TIGR00503, prfC, peptide chain release factor 3. This translation
releasing factor, RF-3 (prfC) was originally described
as stop codon-independent, in contrast to peptide chain
release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and
RF-2 are closely related to each other, while RF-3 is
similar to elongation factors EF-Tu and EF-G; RF-1 is
active at UAA and UAG and RF-2 is active at UAA and UGA.
More recently, RF-3 was shown to be active primarily at
UGA stop codons in E. coli. All bacteria and organelles
have RF-1. The Mycoplasmas and organelles, which
translate UGA as Trp rather than as a stop codon, lack
RF-2. RF-3, in contrast, seems to be rare among bacteria
and is found so far only in Escherichia coli and some
other gamma subdivision Proteobacteria, in Synechocystis
PCC6803, and in Staphylococcus aureus.
Length = 527
Score = 166 bits (422), Expect = 1e-41
Identities = 128/487 (26%), Positives = 220/487 (45%), Gaps = 48/487 (9%)
Query: 6 KIEDSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVH----DGSATMDWMEQEQERGI 61
+++ R F I++H DAGKTT TE++L Y G G V A DWME E++RGI
Sbjct: 7 EVDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGI 66
Query: 62 TITSASTTVFWPGRDGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQT 121
+IT+ + + +P RD + ++DTPGH DF+ + R++ D + ++D+ GVE +T
Sbjct: 67 SITT--SVMQFPYRD---CLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRT 121
Query: 122 ETVWRQADKYSVPRVIFCNKMDKMGADFYRSVEMISSRLGANPLVIQLPVGSESNFQGVI 181
+ P F NK+D+ D ++ + + L N I P+G F+GV
Sbjct: 122 RKLMEVTRLRDTPIFTFMNKLDRDIRDPLELLDEVENELKINCAPITWPIGCGKLFKGVY 181
Query: 182 DLVEMKALLWKNEDLGSSWDVVEIPEDMKDSANSYRDKMIESIVELDDSA--MDSYLQGE 239
L++ + L+++ G + V + + + A ++S V D + D E
Sbjct: 182 HLLKDETYLYQSGT-GGTIQAVRQVKGLNNPA-------LDSAVGSDLAQQLRDELELVE 233
Query: 240 SFSSDRIRSLIRLGTISVKFFPVLCGSSFKNKGVQPLLDAVVDYLPSPLDVRAIKGVDVK 299
S++ + G ++ PV G++ N GV LD ++ + P P ++ V+
Sbjct: 234 GASNEFDLAAFHGGEMT----PVFFGTALGNFGVDHFLDGLLQWAPKPEARQSDTRT-VE 288
Query: 300 SNSEIDVSAVDSSPLSMLAFKVMAD---SFVGSLTFCRIYSGKISKGDSLLNTVKGKKER 356
E S FK+ A+ + F R+ SGK KG L + GK
Sbjct: 289 PTEE---------KFSGFVFKIQANMDPKHRDRVAFMRVVSGKYEKGMKLKHVRTGKDVV 339
Query: 357 VGRMLQMHSNSREDIDEAYCGDIIALAGLKETTTGDTLCDPSRPIVLERMDFP-----EP 411
+ L + RE ++EAY GDII L GDT E++ F P
Sbjct: 340 ISDALTFMAGDREHVEEAYAGDIIGLHNHGTIQIGDTFTQG------EKIKFTGIPNFAP 393
Query: 412 VIQIAIEPKSKGDQERMSLALSRLVAEDPSLRVSMDPNSGQTNLSGMGELHLEIIVDRML 471
+ I K Q+++ L +L +E+ +++V ++ + +G L +++V R+
Sbjct: 394 ELFRRIRLKDPLKQKQLLKGLVQL-SEEGAVQVFRPLDNNDLIVGAVGVLQFDVVVYRLK 452
Query: 472 REFKVDA 478
E+ V+A
Sbjct: 453 EEYNVEA 459
>gnl|CDD|177730 PLN00116, PLN00116, translation elongation factor EF-2 subunit;
Provisional.
Length = 843
Score = 156 bits (397), Expect = 1e-38
Identities = 160/594 (26%), Positives = 257/594 (43%), Gaps = 132/594 (22%)
Query: 1 MARKCKIEDSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATM-DWMEQEQER 59
M +K I RN ++AH+D GK+T T+ ++ AG I + G M D E ER
Sbjct: 13 MDKKHNI---RNMSVIAHVDHGKSTLTDSLVAAAGI---IAQEVAGDVRMTDTRADEAER 66
Query: 60 GITITSASTTVFW-----------PGRDGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAI 108
GITI S ++++ RDG + + +ID+PGHVDF+ EV ++R+TDGA+
Sbjct: 67 GITIKSTGISLYYEMTDESLKDFKGERDGNEYLINLIDSPGHVDFSSEVTAALRITDGAL 126
Query: 109 ALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKMGADFYRSVEMISSRLGANPLVIQ 168
++D GV QTETV RQA + V+ NKMD+ ++
Sbjct: 127 VVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC--------------------FLE 166
Query: 169 LPVGSE---SNFQGVIDLVEMKALLWKNEDLGSSWDVVEIPE--DMKDSAN--------S 215
L V E F VI+ + +++ LG DV PE + SA +
Sbjct: 167 LQVDGEEAYQTFSRVIENANVIMATYEDPLLG---DVQVYPEKGTVAFSAGLHGWAFTLT 223
Query: 216 YRDKMIESIVELDDSAMDSYLQGES-------------------------FSSDRIRSLI 250
KM S +D+S M L GE+ F + I+ +I
Sbjct: 224 NFAKMYASKFGVDESKMMERLWGENFFDPATKKWTTKNTGSPTCKRGFVQFCYEPIKQII 283
Query: 251 R-------------LGTISVKFFPV---LCGSSFKNKGVQPLLDA-------VVDYLPSP 287
L + V L G + + +Q L A ++ +LPSP
Sbjct: 284 NTCMNDQKDKLWPMLEKLGVTLKSDEKELMGKALMKRVMQTWLPASDALLEMIIFHLPSP 343
Query: 288 LDVRAIKGVDVKSNSEID------VSAVDSS-PLSMLAFKVMADSFVGS-LTFCRIYSGK 339
+ + V+ +D + D + PL + K++ S G F R++SG
Sbjct: 344 AKAQRYR-VENLYEGPLDDKYATAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGT 402
Query: 340 ISKGDSLL----NTVKGKK-----ERVGRMLQMHSNSREDIDEAYCGDIIALAGL----- 385
++ G + N V G+K + V R + +E +++ CG+ +A+ GL
Sbjct: 403 VATGMKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQESVEDVPCGNTVAMVGLDQFIT 462
Query: 386 KETTTGDTLCDPSRPIVLERMDFP-EPVIQIAIEPKSKGDQERMSLALSRLVAEDPSLRV 444
K T + + PI + M F PV+++A++ K+ D ++ L RL DP ++
Sbjct: 463 KNATLTNEKEVDAHPI--KAMKFSVSPVVRVAVQCKNASDLPKLVEGLKRLAKSDPMVQC 520
Query: 445 SMDPNSGQTNLSGMGELHLEIIVDRMLREFKVDAN--VGAPYVSYRESVT-KSC 495
+++ SG+ ++G GELHLEI + + +F A V P VS+RE+V KSC
Sbjct: 521 TIE-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEIKVSDPVVSFRETVLEKSC 573
Score = 45.9 bits (109), Expect = 3e-05
Identities = 34/141 (24%), Positives = 60/141 (42%), Gaps = 20/141 (14%)
Query: 557 GPLAGFPMLGMKVTLLDGDYHDVDSSVLAFEI---------AARACFREAASKMGVQLLE 607
G LA M G+ + D H A I AR + +LLE
Sbjct: 675 GALAEENMRGICFEVCDVVLH-------ADAIHRGGGQIIPTARRVIYASQLTAKPRLLE 727
Query: 608 PLMKVEVTVPAEYVGDVIGDLSSRRGQIQGQENRS---VYVVIDAHVPLSCMFKYVDSLR 664
P+ VE+ P + +G + L+ +RG + + R +Y I A++P+ F + +LR
Sbjct: 728 PVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLY-NIKAYLPVIESFGFSGTLR 786
Query: 665 SMSQGRGQYTMIFDHYAPVPA 685
+ + G+ +FDH+ + +
Sbjct: 787 AATSGQAFPQCVFDHWDMMSS 807
>gnl|CDD|181029 PRK07560, PRK07560, elongation factor EF-2; Reviewed.
Length = 731
Score = 147 bits (373), Expect = 1e-35
Identities = 75/230 (32%), Positives = 123/230 (53%), Gaps = 13/230 (5%)
Query: 276 LLDAVVDYLPSPLD-----VRAI-KGVDVKSNSEID---VSAVDSSPLSMLAFKVMADSF 326
+LD VV +LP+P++ + I KG D+ NSE+ ++ + PL M+ ++ D
Sbjct: 247 VLDMVVKHLPNPIEAQKYRIPKIWKG-DL--NSEVGKAMLNCDPNGPLVMMVTDIIVDPH 303
Query: 327 VGSLTFCRIYSGKISKGDSLLNTVKGKKERVGRMLQMHSNSREDIDEAYCGDIIALAGLK 386
G + R++SG + KG + KK RV ++ RE+++E G+I A+ GLK
Sbjct: 304 AGEVATGRVFSGTLRKGQEVYLVGAKKKNRVQQVGIYMGPEREEVEEIPAGNIAAVTGLK 363
Query: 387 ETTTGDTLCDPSRPIVLERMD-FPEPVIQIAIEPKSKGDQERMSLALSRLVAEDPSLRVS 445
+ G+T+ E + EPV+ +AIE K+ D ++ L +L EDP+L V
Sbjct: 364 DARAGETVVSVEDMTPFESLKHISEPVVTVAIEAKNPKDLPKLIEVLRQLAKEDPTLVVK 423
Query: 446 MDPNSGQTNLSGMGELHLEIIVDRMLREFKVDANVGAPYVSYRESVTKSC 495
++ +G+ LSGMGELHLE+I R+ R++ ++ P V YRE+V
Sbjct: 424 INEETGEHLLSGMGELHLEVITYRIKRDYGIEVVTSEPIVVYRETVRGKS 473
Score = 133 bits (336), Expect = 2e-31
Identities = 64/141 (45%), Positives = 90/141 (63%), Gaps = 5/141 (3%)
Query: 6 KIEDSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSA-TMDWMEQEQERGITIT 64
E RN GI+AHID GKTT ++ +L AG I E G +D+ E+EQ RGITI
Sbjct: 16 NPEQIRNIGIIAHIDHGKTTLSDNLLAGAGM---ISEELAGEQLALDFDEEEQARGITIK 72
Query: 65 SASTTVFWPGRDGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETV 124
+A+ ++ +G + + +IDTPGHVDF +V R++R DGAI ++D+ GV PQTETV
Sbjct: 73 AANVSMVHE-YEGKEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETV 131
Query: 125 WRQADKYSVPRVIFCNKMDKM 145
RQA + V V+F NK+D++
Sbjct: 132 LRQALRERVKPVLFINKVDRL 152
Score = 92.2 bits (230), Expect = 4e-19
Identities = 47/152 (30%), Positives = 76/152 (50%), Gaps = 10/152 (6%)
Query: 546 VRKGIESMLSSGPLAGFPMLGMKVTLLDGDYHDVDS------SVLAFEIAARACFREAAS 599
+ +G + GPLA P+ G+KV L D H+ D+ V+ A R A
Sbjct: 562 IIEGFREAMKEGPLAAEPVRGVKVRLHDAKLHE-DAIHRGPAQVIP---AVRNAIFAAML 617
Query: 600 KMGVQLLEPLMKVEVTVPAEYVGDVIGDLSSRRGQIQGQENRSVYVVIDAHVPLSCMFKY 659
LLEP+ KV++ VP +Y+G V ++ RRG+I E +I+A P++ MF +
Sbjct: 618 TAKPTLLEPIQKVDINVPQDYMGAVTREIQGRRGKILDMEQEGDMAIIEAEAPVAEMFGF 677
Query: 660 VDSLRSMSQGRGQYTMIFDHYAPVPAHVSKEI 691
+RS ++GR ++ F + PVP + +I
Sbjct: 678 AGEIRSATEGRALWSTEFAGFEPVPDSLQLDI 709
>gnl|CDD|129071 smart00838, EFG_C, Elongation factor G C-terminus. This domain
includes the carboxyl terminal regions of Elongation
factor G, elongation factor 2 and some tetracycline
resistance proteins and adopt a ferredoxin-like fold.
Length = 85
Score = 136 bits (346), Expect = 1e-32
Identities = 51/85 (60%), Positives = 62/85 (72%)
Query: 605 LLEPLMKVEVTVPAEYVGDVIGDLSSRRGQIQGQENRSVYVVIDAHVPLSCMFKYVDSLR 664
LLEP+MKVEVTVP EY+GDVIGDL+SRRG+I+G E R VI A VPLS MF Y LR
Sbjct: 1 LLEPIMKVEVTVPEEYMGDVIGDLNSRRGKIEGMEQRGGAQVIKAKVPLSEMFGYATDLR 60
Query: 665 SMSQGRGQYTMIFDHYAPVPAHVSK 689
S +QGR ++M F HY VP +++
Sbjct: 61 SATQGRATWSMEFSHYEEVPKSIAE 85
>gnl|CDD|162336 TIGR01394, TypA_BipA, GTP-binding protein TypA/BipA. This
bacterial (and Arabidopsis) protein, termed TypA or
BipA, a GTP-binding protein, is phosphorylated on a
tyrosine residue under some cellular conditions. Mutants
show altered regulation of some pathways, but the
precise function is unknown.
Length = 594
Score = 115 bits (290), Expect = 4e-26
Identities = 52/146 (35%), Positives = 82/146 (56%), Gaps = 7/146 (4%)
Query: 11 RNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTV 70
RN I+AH+D GKTT + +L +G V + MD + E+ERGITI + +T +
Sbjct: 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAE--RVMDSNDLERERGITILAKNTAI 59
Query: 71 FWPGRDGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADK 130
+ G K+ I+DTPGH DF EVER + + DG + L+D++ G PQT V ++A +
Sbjct: 60 RYNG-----TKINIVDTPGHADFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALE 114
Query: 131 YSVPRVIFCNKMDKMGADFYRSVEMI 156
+ ++ NK+D+ A V+ +
Sbjct: 115 LGLKPIVVINKIDRPSARPDEVVDEV 140
Score = 104 bits (261), Expect = 8e-23
Identities = 67/228 (29%), Positives = 107/228 (46%), Gaps = 34/228 (14%)
Query: 275 PLLDAVVDYLPSPLDVRAIKGVDVKSNSEIDVSAVDSSPLSMLAFKVMADSFVGSLTFCR 334
PL DA+V ++P+P PL ML + D ++G + R
Sbjct: 181 PLFDAIVRHVPAP-------------------KGDLDEPLQMLVTNLDYDEYLGRIAIGR 221
Query: 335 IYSGKISKGDSL-LNTVKGKKE--RVGRMLQMHSNSREDIDEAYCGDIIALAGLKETTTG 391
++ G + KG + L G E R+ ++L R +IDEA GDI+A+AGL++ G
Sbjct: 222 VHRGTVKKGQQVALMKRDGTIENGRISKLLGFEGLERVEIDEAGAGDIVAVAGLEDINIG 281
Query: 392 DTLCDPSRPIVLERMDFPEPVIQIAIEPK------SKGDQERMSLALSRLVAE---DPSL 442
+T+ DP P L + EP + + +G + RL+ E + +L
Sbjct: 282 ETIADPEVPEALPTITVDEPTLSMTFSVNDSPLAGKEGKKVTSRHIRDRLMRELETNVAL 341
Query: 443 RVSMDPNSGQTNLSGMGELHLEIIVDRMLRE-FKVDANVGAPYVSYRE 489
RV ++ + +SG GELHL I+++ M RE F++ VG P V Y+E
Sbjct: 342 RVEDTESADKFEVSGRGELHLSILIETMRREGFEL--QVGRPQVIYKE 387
Score = 47.7 bits (114), Expect = 9e-06
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 604 QLLEPLMKVEVTVPAEYVGDVIGDLSSRRGQIQGQENR-SVYVVIDAHVPLSCMFKYVDS 662
+ LEP+ ++ + VP E+VG VI L R+G++ E + ++ +P + +
Sbjct: 391 KKLEPIEELTIDVPEEHVGAVIEKLGKRKGEMVDMEPSGNGRTRLEFKIPSRGLIGFRTE 450
Query: 663 LRSMSQGRGQYTMIFDHYAP 682
+ ++G G +FD Y P
Sbjct: 451 FLTDTRGTGIMNHVFDEYEP 470
>gnl|CDD|130460 TIGR01393, lepA, GTP-binding protein LepA. LepA (GUF1 in
Saccaromyces) is a GTP-binding membrane protein related
to EF-G and EF-Tu. Two types of phylogenetic tree,
rooted by other GTP-binding proteins, suggest that
eukaryotic homologs (including GUF1 of yeast) originated
within the bacterial LepA family. The function is
unknown.
Length = 595
Score = 115 bits (289), Expect = 5e-26
Identities = 50/111 (45%), Positives = 70/111 (63%), Gaps = 3/111 (2%)
Query: 11 RNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTV 70
RNF I+AHID GK+T +R+L Y G I E +D M+ E+ERGITI + + +
Sbjct: 4 RNFSIIAHIDHGKSTLADRLLEYTGA---ISEREMREQVLDSMDLERERGITIKAQAVRL 60
Query: 71 FWPGRDGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQT 121
+ +DG L +IDTPGHVDF+ EV RS+ +GA+ L+D+ G+E QT
Sbjct: 61 NYKAKDGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQT 111
Score = 69.7 bits (171), Expect = 2e-12
Identities = 58/228 (25%), Positives = 92/228 (40%), Gaps = 33/228 (14%)
Query: 272 GVQPLLDAVVDYLPSPLDVRAIKGVDVKSNSEIDVSAVDSSPLSMLAFKVMADSFVGSLT 331
G++ +L+A+V +P P +PL L F D++ G +
Sbjct: 167 GIEEILEAIVKRVPPPKGD-------------------PDAPLKALIFDSHYDNYRGVVA 207
Query: 332 FCRIYSGKISKGDSLLNTVKGKKERVGRMLQMHSNSREDIDEAYCGD----IIALAGLKE 387
R++ G I GD + GK+ V + + DE G+ I + + +
Sbjct: 208 LVRVFEGTIKPGDKIRFMSTGKEYEVDEVGVFTPKLTKT-DELSAGEVGYIIAGIKDVSD 266
Query: 388 TTTGDTLCDPSRPI--VLERMDFPEPVIQIAIEPKSKGDQERMSLALSRLVAEDPSLRVS 445
GDT+ P L +P++ + P D E + AL +L D SL +
Sbjct: 267 VRVGDTITHVKNPAKEPLPGFKEVKPMVFAGLYPIDTEDYEDLRDALEKLKLNDASL--T 324
Query: 446 MDPNSGQTNLSG-----MGELHLEIIVDRMLREFKVDANVGAPYVSYR 488
+P S G +G LH+EII +R+ REF +D AP V YR
Sbjct: 325 YEPESSPALGFGFRCGFLGLLHMEIIQERLEREFNLDLITTAPSVIYR 372
Score = 41.2 bits (97), Expect = 0.001
Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 604 QLLEPLMKVEVTVPAEYVGDVIGDLSSRRGQIQGQENRS---VYVVIDAHVPLS-CMFKY 659
+ EP +K + P EY+G ++ +RG E V ++ + +PL+ ++ +
Sbjct: 397 HVEEPYVKATIITPTEYLGPIMTLCQEKRGVQTNMEYLDPNRVELIYE--MPLAEIVYDF 454
Query: 660 VDSLRSMSQG 669
D L+S+S+G
Sbjct: 455 FDKLKSISRG 464
>gnl|CDD|180078 PRK05433, PRK05433, GTP-binding protein LepA; Provisional.
Length = 600
Score = 108 bits (272), Expect = 6e-24
Identities = 48/112 (42%), Positives = 72/112 (64%), Gaps = 5/112 (4%)
Query: 11 RNFGIMAHIDAGKTTTTERILYYAGK-SHKIGEVHDGSATMDWMEQEQERGITITSASTT 69
RNF I+AHID GK+T +R++ G S + E+ +D M+ E+ERGITI + +
Sbjct: 8 RNFSIIAHIDHGKSTLADRLIELTGTLSER--EMKA--QVLDSMDLERERGITIKAQAVR 63
Query: 70 VFWPGRDGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQT 121
+ + +DG L +IDTPGHVDF+ EV RS+ +GA+ ++D++ GVE QT
Sbjct: 64 LNYKAKDGETYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQT 115
Score = 60.4 bits (148), Expect = 2e-09
Identities = 67/233 (28%), Positives = 103/233 (44%), Gaps = 43/233 (18%)
Query: 272 GVQPLLDAVVDYLPSPLDVRAIKGVDVKSNSEIDVSAVDSSPLSMLAFKVMADSFVGSLT 331
G++ +L+A+V+ +P P KG D A PL L F D++ G +
Sbjct: 171 GIEEVLEAIVERIPPP------KG---------DPDA----PLKALIFDSWYDNYRGVVV 211
Query: 332 FCRIYSGKISKGDSLLNTVKGKK---ERVGRMLQMHSNSREDIDEAYCGDI--IALAGLK 386
R+ G + KGD + GK+ + VG + +DE G++ I AG+K
Sbjct: 212 LVRVVDGTLKKGDKIKMMSTGKEYEVDEVGVF----TPKMVPVDELSAGEVGYII-AGIK 266
Query: 387 E---TTTGDTLCDPSRPIVLERMD-FPE--PVIQIAIEPKSKGDQERMSLALSRLVAEDP 440
+ GDT+ P E + F E P++ + P D E + AL +L D
Sbjct: 267 DVRDARVGDTITLAKNP-AEEPLPGFKEVKPMVFAGLYPVDSDDYEDLRDALEKLQLNDA 325
Query: 441 SLRVSMDPNSGQTNLSG-----MGELHLEIIVDRMLREFKVDANVGAPYVSYR 488
SL + +P + Q G +G LH+EII +R+ REF +D AP V Y
Sbjct: 326 SL--TYEPETSQALGFGFRCGFLGLLHMEIIQERLEREFDLDLITTAPSVVYE 376
Score = 45.0 bits (108), Expect = 6e-05
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 607 EPLMKVEVTVPAEYVGDVIGDLSSRRGQIQGQENRSVYVVIDAHVPLS-CMFKYVDSLRS 665
EP++K + VP EYVG V+ +RG + E V + +PL+ +F + D L+S
Sbjct: 404 EPIVKATIIVPQEYVGAVMELCQEKRGVQKDMEYLGNRVELTYELPLAEIVFDFFDRLKS 463
Query: 666 MSQG 669
+S+G
Sbjct: 464 VSRG 467
>gnl|CDD|161778 TIGR00231, small_GTP, small GTP-binding protein domain. This model
recognizes a large number of small GTP-binding proteins
and related domains in larger proteins. Note that the
alpha chains of heterotrimeric G proteins are larger
proteins in which the NKXD motif is separated from the
GxxxxGK[ST] motif (P-loop) by a long insert and are not
easily detected by this model.
Length = 161
Score = 107 bits (268), Expect = 1e-23
Identities = 44/182 (24%), Positives = 69/182 (37%), Gaps = 30/182 (16%)
Query: 11 RNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTV 70
I+ + GK+T R+L I E G+ +E G T
Sbjct: 2 IKIVIVGDPNVGKSTLLNRLLGN----KFITEYKPGTTRNYVTTVIEEDGKTY------- 50
Query: 71 FWPGRDGGQKKLTIIDTPGHVDF-------TMEVERSIRVTDGAIALLDSNAGVEPQTET 123
K ++DT G D+ VE S+RV D I +LD +E QT+
Sbjct: 51 ----------KFNLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKE 100
Query: 124 VWRQADKYSVPRVIFCNKMDKMGADFYRSVEMISSRLGANPLVIQLPVGSESNFQGVIDL 183
+ A+ +VP ++ NK+D A V + ++L P +I L + N +
Sbjct: 101 IIHHAE-SNVPIILVGNKIDLRDAKLKTHVAFLFAKLNGEP-IIPLSAETGKNIDSAFKI 158
Query: 184 VE 185
VE
Sbjct: 159 VE 160
>gnl|CDD|104396 PRK10218, PRK10218, GTP-binding protein; Provisional.
Length = 607
Score = 93.2 bits (231), Expect = 2e-19
Identities = 52/141 (36%), Positives = 80/141 (56%), Gaps = 7/141 (4%)
Query: 7 IEDSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSA 66
IE RN I+AH+D GKTT +++L +G E + MD + E+ERGITI +
Sbjct: 2 IEKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQE--RVMDSNDLEKERGITILAK 59
Query: 67 STTVFWPGRDGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWR 126
+T + W ++ I+DTPGH DF EVER + + D + ++D+ G PQT V +
Sbjct: 60 NTAIKW-----NDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTK 114
Query: 127 QADKYSVPRVIFCNKMDKMGA 147
+A Y + ++ NK+D+ GA
Sbjct: 115 KAFAYGLKPIVVINKVDRPGA 135
Score = 77.4 bits (190), Expect = 1e-14
Identities = 61/229 (26%), Positives = 103/229 (44%), Gaps = 32/229 (13%)
Query: 273 VQPLLDAVVDYLPSPLDVRAIKGVDVKSNSEIDVSAVDSSPLSMLAFKVMADSFVGSLTF 332
+ PL A+VD++P+P ++D+ P M ++ +S+VG +
Sbjct: 183 MTPLYQAIVDHVPAP---------------DVDLDG----PFQMQISQLDYNSYVGVIGI 223
Query: 333 CRIYSGKISKGDSLL---NTVKGKKERVGRMLQMHSNSREDIDEAYCGDIIALAGLKETT 389
RI GK+ + + K + +VG++L R + D A GDI+A+ GL E
Sbjct: 224 GRIKRGKVKPNQQVTIIDSEGKTRNAKVGKVLGHLGLERIETDLAEAGDIVAITGLGELN 283
Query: 390 TGDTLCDPSRPIVLERMDFPEPVIQ----IAIEP----KSKGDQERMSLA-LSRLVAEDP 440
DT+CD L + EP + + P + K R L L++ + +
Sbjct: 284 ISDTVCDTQNVEALPALSVDEPTVSMFFCVNTSPFCGKEGKFVTSRQILDRLNKELVHNV 343
Query: 441 SLRVSMDPNSGQTNLSGMGELHLEIIVDRMLREFKVDANVGAPYVSYRE 489
+LRV ++ +SG GELHL ++++ M RE + V P V +RE
Sbjct: 344 ALRVEETEDADAFRVSGRGELHLSVLIENMRRE-GFELAVSRPKVIFRE 391
Score = 29.3 bits (65), Expect = 3.9
Identities = 27/110 (24%), Positives = 45/110 (40%), Gaps = 9/110 (8%)
Query: 585 AFEIAA---RACFREAASKMGVQLLEPLMKVEVTVPAEYVGDVIGDLSSRRGQIQGQE-N 640
FE+A + FRE + EP V + V ++ G V+ L R+G ++ +
Sbjct: 377 GFELAVSRPKVIFREIDGRKQ----EPYENVTLDVEEQHQGSVMQALGERKGDLKNMNPD 432
Query: 641 RSVYVVIDAHVPLSCMFKYVDSLRSMSQGRGQYTMIFDHYAPV-PAHVSK 689
V +D +P + + +M+ G G F HY V P V +
Sbjct: 433 GKGRVRLDYVIPSRGLIGFRSEFMTMTSGTGLLYSTFSHYDDVRPGEVGQ 482
>gnl|CDD|161900 TIGR00487, IF-2, translation initiation factor IF-2. This model
discriminates eubacterial (and mitochondrial)
translation initiation factor 2 (IF-2), encoded by the
infB gene in bacteria, from similar proteins in the
Archaea and Eukaryotes. In the bacteria and in
organelles, the initiator tRNA is charged with
N-formyl-Met instead of Met. This translation factor
acts in delivering the initator tRNA to the ribosome. It
is one of a number of GTP-binding translation factors
recognized by the pfam model GTP_EFTU.
Length = 587
Score = 65.6 bits (160), Expect = 4e-11
Identities = 55/187 (29%), Positives = 84/187 (44%), Gaps = 29/187 (15%)
Query: 15 IMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPG 74
IM H+D GKT+ + I + K+ + G GIT + V
Sbjct: 92 IMGHVDHGKTSLLDSI-----RKTKVAQGEAG-------------GITQHIGAYHV---- 129
Query: 75 RDGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVP 134
+ K +T +DTPGH FT R +VTD + ++ ++ GV PQT A +VP
Sbjct: 130 ENEDGKMITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVP 189
Query: 135 RVIFCNKMDKMGADFYRSVEMISSRLGANPL-----VIQLPVGSESNFQGVIDLVEMKAL 189
++ NK+DK A+ R V+ S G P I +PV S G+ +L++M L
Sbjct: 190 IIVAINKIDKPEANPDR-VKQELSEYGLVPEDWGGDTIFVPV-SALTGDGIDELLDMILL 247
Query: 190 LWKNEDL 196
+ E+L
Sbjct: 248 QSEVEEL 254
>gnl|CDD|129574 TIGR00483, EF-1_alpha, translation elongation factor EF-1 alpha.
This model represents the counterpart of bacterial EF-Tu
for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1
alpha). The trusted cutoff is set fairly high so that
incomplete sequences will score between suggested and
trusted cutoff levels.
Length = 426
Score = 63.7 bits (155), Expect = 1e-10
Identities = 62/224 (27%), Positives = 96/224 (42%), Gaps = 31/224 (13%)
Query: 12 NFGIMAHIDAGKTTTTERILYYAG--------KSHKIGEVHDGSAT------MDWMEQEQ 57
N + H+D GK+TT +LY G K K + G A+ MD +++E+
Sbjct: 9 NVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQ-EKGKASFEFAWVMDRLKEER 67
Query: 58 ERGITITSASTTVFWPGRDGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAG- 116
ERG+TI A + ++TI+D PGH DF + D A+ ++ G
Sbjct: 68 ERGVTIDVAHWKFETD-----KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGE 122
Query: 117 --VEPQTETVWRQADKYSVPRVIFC-NKMDKMGAD---FYRSVEMISS---RLGANPLVI 167
V+PQT A + ++I NKMD + D F + +S+ ++G NP +
Sbjct: 123 FEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDEEEFEAIKKEVSNLIKKVGYNPDTV 182
Query: 168 QLPVGSESNFQGVIDLVEMKALLWKNEDLGSSWDVVEIPEDMKD 211
S N VI E +K + L + D +E PE D
Sbjct: 183 PFIPISAWNGDNVIKKSE-NTPWYKGKTLLEALDALEPPEKPTD 225
>gnl|CDD|183433 PRK12317, PRK12317, elongation factor 1-alpha; Reviewed.
Length = 425
Score = 58.8 bits (143), Expect = 5e-09
Identities = 38/128 (29%), Positives = 58/128 (45%), Gaps = 26/128 (20%)
Query: 12 NFGIMAHIDAGKTTTTERILYYAG-------KSHKIGEVHDGSAT------MDWMEQEQE 58
N ++ H+D GK+T R+LY G + + G + MD +++E+E
Sbjct: 8 NLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERE 67
Query: 59 RGITITSASTTVFWPGRDGGQKKLTIIDTPGHVDFTMEVERSIRVT---DGAIALL--DS 113
RG+TI A + + TI+D PGH DF V+ I D A+ ++ D
Sbjct: 68 RGVTIDLAHKKF-----ETDKYYFTIVDCPGHRDF---VKNMITGASQADAAVLVVAADD 119
Query: 114 NAGVEPQT 121
GV PQT
Sbjct: 120 AGGVMPQT 127
>gnl|CDD|129567 TIGR00475, selB, selenocysteine-specific elongation factor SelB.
In prokaryotes, the incorporation of selenocysteine as
the 21st amino acid, encoded by TGA, requires several
elements: SelC is the tRNA itself, SelD acts as a donor
of reduced selenium, SelA modifies a serine residue on
SelC into selenocysteine, and SelB is a
selenocysteine-specific translation elongation factor.
3-prime or 5-prime non-coding elements of mRNA have been
found as probable structures for directing
selenocysteine incorporation. This model describes the
elongation factor SelB, a close homolog rf EF-Tu. It may
function by replacing EF-Tu. A C-terminal domain not
found in EF-Tu is in all SelB sequences in the seed
alignment except that from Methanococcus jannaschii.
This model does not find an equivalent protein for
eukaryotes.
Length = 581
Score = 56.4 bits (136), Expect = 2e-08
Identities = 36/145 (24%), Positives = 57/145 (39%), Gaps = 21/145 (14%)
Query: 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVF 71
H+D GKTT + + G A + +E++RG+TI +
Sbjct: 2 IIATAGHVDHGKTTLLKAL--------------TGIAADR-LPEEKKRGMTIDLGFA--Y 44
Query: 72 WPGRDGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKY 131
+P D +L ID PGH F D A+ ++D++ GV QT D
Sbjct: 45 FPLPD---YRLGFIDVPGHEKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLL 101
Query: 132 SVPRVIFC-NKMDKMGADFYRSVEM 155
+P I K D++ + + EM
Sbjct: 102 GIPHTIVVITKADRVNEEEIKRTEM 126
Score = 31.0 bits (70), Expect = 1.0
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Query: 318 AFKVMADSFVGSLTFCRIYSGKISKGDSLLNTVKGKKERVGRMLQMHSNSREDIDEAYCG 377
AFKV G++ +SG++ GD+L + RV + +Q +D++ AY G
Sbjct: 184 AFKVKG---AGTVVTGTAFSGEVKVGDNLRLLPINHEVRV-KAIQAQ---NQDVEIAYAG 236
Query: 378 DIIALA 383
IAL
Sbjct: 237 QRIALN 242
>gnl|CDD|129576 TIGR00485, EF-Tu, translation elongation factor TU. This alignment
models orthologs of translation elongation factor EF-Tu
in bacteria, mitochondria, and chloroplasts, one of
several GTP-binding translation factors found by the
more general pfam model GTP_EFTU. The eukaryotic
conterpart, eukaryotic translation elongation factor 1
(eEF-1 alpha), is excluded from this model. EF-Tu is one
of the most abundant proteins in bacteria, as well as
one of the most highly conserved, and in a number of
species the gene is duplicated with identical function.
When bound to GTP, EF-Tu can form a complex with any
(correctly) aminoacylated tRNA except those for
initiation and for selenocysteine, in which case EF-Tu
is replaced by other factors. Transfer RNA is carried to
the ribosome in these complexes for protein translation.
Length = 394
Score = 55.6 bits (134), Expect = 5e-08
Identities = 42/138 (30%), Positives = 58/138 (42%), Gaps = 18/138 (13%)
Query: 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWME-----QEQERGITITSA 66
N G + H+D GKTT T I K G+A + + +E+ RGITI +A
Sbjct: 14 NIGTIGHVDHGKTTLTAAITTVLAK-------EGGAAARAYDQIDNAPEEKARGITINTA 66
Query: 67 STTVFWPGRDGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWR 126
R +D PGH D+ + DGAI ++ + G PQT
Sbjct: 67 HVEYETENRHYAH-----VDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQTREHIL 121
Query: 127 QADKYSVPR-VIFCNKMD 143
A + VP V+F NK D
Sbjct: 122 LARQVGVPYIVVFLNKCD 139
>gnl|CDD|129582 TIGR00491, aIF-2, translation initiation factor aIF-2/yIF-2. This
model describes archaeal and eukaryotic orthologs of
bacterial IF-2. Like IF-2, it helps convey the initiator
tRNA to the ribosome, although the initiator is
N-formyl-Met in bacteria and Met here. This protein is
not closely related to the subunits of eIF-2 of
eukaryotes, which is also involved in the initiation of
translation. The aIF-2 of Methanococcus jannaschii
contains a large intein interrupting a region of very
strongly conserved sequence very near the amino end;
this model does not correctly align the sequences from
Methanococcus jannaschii and Pyrococcus horikoshii in
this region.
Length = 590
Score = 54.8 bits (132), Expect = 6e-08
Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 13/135 (9%)
Query: 15 IMAHIDAGKTTTTERILYYAGKSHKIGEV--HDGSA--TMDWMEQEQERGITITSASTTV 70
++ H+D GKTT ++I A + G + H G+ MD +E + +
Sbjct: 9 VLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKI 68
Query: 71 FWPGRDGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADK 130
PG L IDTPGH FT +R + D AI ++D N G +PQT+
Sbjct: 69 --PG-------LLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRM 119
Query: 131 YSVPRVIFCNKMDKM 145
Y P V+ NK+D++
Sbjct: 120 YKTPFVVAANKIDRI 134
>gnl|CDD|178672 PLN03126, PLN03126, Elongation factor Tu; Provisional.
Length = 478
Score = 53.1 bits (127), Expect = 2e-07
Identities = 40/136 (29%), Positives = 63/136 (46%), Gaps = 10/136 (7%)
Query: 12 NFGIMAHIDAGKTTTTERI-LYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTV 70
N G + H+D GKTT T + + A + +D +D +E+ RGITI +A+
Sbjct: 83 NIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYD---EIDAAPEERARGITINTATVEY 139
Query: 71 FWPGRDGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADK 130
+ + +D PGH D+ + DGAI ++ G PQT+ A +
Sbjct: 140 -----ETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQ 194
Query: 131 YSVPR-VIFCNKMDKM 145
VP V+F NK D++
Sbjct: 195 VGVPNMVVFLNKQDQV 210
>gnl|CDD|165621 PLN00043, PLN00043, elongation factor 1-alpha; Provisional.
Length = 447
Score = 52.4 bits (125), Expect = 4e-07
Identities = 57/201 (28%), Positives = 89/201 (44%), Gaps = 44/201 (21%)
Query: 12 NFGIMAHIDAGKTTTTERILYYAGKSHK---------IGEVHDGSATMDW----MEQEQE 58
N ++ H+D+GK+TTT ++Y G K E++ S W ++ E+E
Sbjct: 9 NIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERE 68
Query: 59 RGITITSA----STTVFWPGRDGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSN 114
RGITI A TT ++ T+ID PGH DF + D A+ ++DS
Sbjct: 69 RGITIDIALWKFETTKYY---------CTVIDAPGHRDFIKNMITGTSQADCAVLIIDST 119
Query: 115 AG-------VEPQTETVWRQADKYSVPRVI-FCNKMDKMGADFYRS-----VEMISS--- 158
G + QT A V ++I CNKMD + ++ V+ +SS
Sbjct: 120 TGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLK 179
Query: 159 RLGANPLVIQLPVGSESNFQG 179
++G NP ++P S F+G
Sbjct: 180 KVGYNP--DKIPFVPISGFEG 198
>gnl|CDD|178673 PLN03127, PLN03127, Elongation factor Tu; Provisional.
Length = 447
Score = 52.1 bits (125), Expect = 5e-07
Identities = 42/136 (30%), Positives = 60/136 (44%), Gaps = 14/136 (10%)
Query: 12 NFGIMAHIDAGKTTTTERI---LYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSAST 68
N G + H+D GKTT T I L GK+ + +D +E+ RGITI +A
Sbjct: 63 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAV-----AFDEIDKAPEEKARGITIATAHV 117
Query: 69 TVFWPGRDGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQA 128
R +D PGH D+ + DG I ++ + G PQT+ A
Sbjct: 118 EYETAKRHYAH-----VDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLA 172
Query: 129 DKYSVPR-VIFCNKMD 143
+ VP V+F NK+D
Sbjct: 173 RQVGVPSLVVFLNKVD 188
>gnl|CDD|185474 PTZ00141, PTZ00141, elongation factor 1- alpha; Provisional.
Length = 446
Score = 52.1 bits (125), Expect = 5e-07
Identities = 49/159 (30%), Positives = 71/159 (44%), Gaps = 26/159 (16%)
Query: 12 NFGIMAHIDAGKTTTTERILYYAGKSHK--IGEVHDGSATM-----------DWMEQEQE 58
N ++ H+D+GK+TTT ++Y G K I + +A M D ++ E+E
Sbjct: 9 NLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERE 68
Query: 59 RGITITSASTTVFWPGRDGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGV- 117
RGITI A W + + TIID PGH DF + D AI ++ S AG
Sbjct: 69 RGITIDIA----LWK-FETPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEF 123
Query: 118 ------EPQTETVWRQADKYSVPRVIFC-NKMDKMGADF 149
+ QT A V ++I C NKMD ++
Sbjct: 124 EAGISKDGQTREHALLAFTLGVKQMIVCINKMDDKTVNY 162
>gnl|CDD|183709 PRK12736, PRK12736, elongation factor Tu; Reviewed.
Length = 394
Score = 49.9 bits (120), Expect = 2e-06
Identities = 41/133 (30%), Positives = 59/133 (44%), Gaps = 8/133 (6%)
Query: 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVF 71
N G + H+D GKTT T I + + ++D +E+ERGITI +A
Sbjct: 14 NIGTIGHVDHGKTTLTAAITKVLAE--RGLNQAKDYDSIDAAPEEKERGITINTAHVEYE 71
Query: 72 WPGRDGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKY 131
R +D PGH D+ + DGAI ++ + G PQT A +
Sbjct: 72 TEKRHYAH-----VDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQV 126
Query: 132 SVPR-VIFCNKMD 143
VP V+F NK+D
Sbjct: 127 GVPYLVVFLNKVD 139
>gnl|CDD|180006 PRK05306, infB, translation initiation factor IF-2; Validated.
Length = 787
Score = 48.7 bits (117), Expect = 5e-06
Identities = 30/74 (40%), Positives = 38/74 (51%), Gaps = 10/74 (13%)
Query: 80 KKLTIIDTPGHVDFTMEVERSIRVTDGAIALL-----DSNAGVEPQTETVWRQADKYSVP 134
K+T +DTPGH FT R +VTD I +L D GV PQT A VP
Sbjct: 337 GKITFLDTPGHEAFTAMRARGAQVTD--IVVLVVAADD---GVMPQTIEAINHAKAAGVP 391
Query: 135 RVIFCNKMDKMGAD 148
++ NK+DK GA+
Sbjct: 392 IIVAINKIDKPGAN 405
>gnl|CDD|184848 PRK14845, PRK14845, translation initiation factor IF-2;
Provisional.
Length = 1049
Score = 47.6 bits (113), Expect = 1e-05
Identities = 24/64 (37%), Positives = 34/64 (53%)
Query: 82 LTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNK 141
L IDTPGH FT +R + D A+ ++D N G +PQT +Y P V+ NK
Sbjct: 528 LLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANK 587
Query: 142 MDKM 145
+D +
Sbjct: 588 IDLI 591
>gnl|CDD|183708 PRK12735, PRK12735, elongation factor Tu; Reviewed.
Length = 396
Score = 47.1 bits (113), Expect = 1e-05
Identities = 52/155 (33%), Positives = 69/155 (44%), Gaps = 28/155 (18%)
Query: 1 MARKCKIEDSR---NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQ 57
MA K K E ++ N G + H+D GKTT T I K GE +D +E+
Sbjct: 1 MA-KEKFERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGG-GEAKAYDQ-IDNAPEEK 57
Query: 58 ERGITITSASTTVFWPGRDGGQKKLTIIDTPGHVDFTMEVERSIRVT-----DGAIALLD 112
RGITI ++ R +D PGH D+ V+ I T DGAI ++
Sbjct: 58 ARGITINTSHVEYETANRHYAH-----VDCPGHADY---VKNMI--TGAAQMDGAILVVS 107
Query: 113 SNAGVEPQT-ETVW--RQADKYSVPR-VIFCNKMD 143
+ G PQT E + RQ VP V+F NK D
Sbjct: 108 AADGPMPQTREHILLARQVG---VPYIVVFLNKCD 139
>gnl|CDD|179704 PRK04004, PRK04004, translation initiation factor IF-2; Validated.
Length = 586
Score = 45.6 bits (109), Expect = 4e-05
Identities = 42/144 (29%), Positives = 60/144 (41%), Gaps = 33/144 (22%)
Query: 15 IMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERG-ITITSASTTVFW- 72
++ H+D GKTT ++I G+A +E G IT +T V
Sbjct: 11 VLGHVDHGKTTLLDKI--------------RGTAV-----AAKEAGGITQHIGATEVPID 51
Query: 73 -------PGRDGGQKKLTI-----IDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQ 120
P + KL I IDTPGH FT +R + D AI ++D N G +PQ
Sbjct: 52 VIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAFTNLRKRGGALADIAILVVDINEGFQPQ 111
Query: 121 TETVWRQADKYSVPRVIFCNKMDK 144
T + P V+ NK+D+
Sbjct: 112 TIEAINILKRRKTPFVVAANKIDR 135
>gnl|CDD|178823 PRK00049, PRK00049, elongation factor Tu; Reviewed.
Length = 396
Score = 44.8 bits (107), Expect = 8e-05
Identities = 52/155 (33%), Positives = 68/155 (43%), Gaps = 28/155 (18%)
Query: 1 MARKCKIEDSR---NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQ 57
MA K K E ++ N G + H+D GKTT T I K E +D +E+
Sbjct: 1 MA-KEKFERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGG-AEAKA-YDQIDKAPEEK 57
Query: 58 ERGITITSASTTVFWPGRDGGQKKLTIIDTPGHVDFTMEVERSIRVT-----DGAIALLD 112
RGITI +A R +D PGH D+ V+ I T DGAI ++
Sbjct: 58 ARGITINTAHVEYETEKRHYAH-----VDCPGHADY---VKNMI--TGAAQMDGAILVVS 107
Query: 113 SNAGVEPQT-ETVW--RQADKYSVPR-VIFCNKMD 143
+ G PQT E + RQ VP V+F NK D
Sbjct: 108 AADGPMPQTREHILLARQV---GVPYIVVFLNKCD 139
>gnl|CDD|131089 TIGR02034, CysN, sulfate adenylyltransferase, large subunit.
Homologous to this E.coli activation pathway are nodPQH
gene products found among members of the Rhizobiaceae
family. These gene products have been shown to exhibit
ATP sulfurase and APS kinase activity, yet are involved
in Nod factor sulfation, and sulfation of other
macromolecules. With members of the Rhizobiaceae family,
nodQ often appears as a fusion of cysN (large subunit of
ATP sulfurase) and cysC (APS kinase).
Length = 406
Score = 44.3 bits (105), Expect = 1e-04
Identities = 34/122 (27%), Positives = 52/122 (42%), Gaps = 28/122 (22%)
Query: 19 IDAGKTTTTERILYYAG---------------KSHKIGEVHDGSATMDWMEQEQERGITI 63
+D GK+T R+L+ K G D + +D ++ E+E+GITI
Sbjct: 9 VDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITI 68
Query: 64 TSA----STTVFWPGRDGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEP 119
A ST ++K + DTPGH +T + D A+ L+D+ GV
Sbjct: 69 DVAYRYFSTD---------KRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLE 119
Query: 120 QT 121
QT
Sbjct: 120 QT 121
>gnl|CDD|180120 PRK05506, PRK05506, bifunctional sulfate adenylyltransferase
subunit 1/adenylylsulfate kinase protein; Provisional.
Length = 632
Score = 43.4 bits (103), Expect = 2e-04
Identities = 47/158 (29%), Positives = 69/158 (43%), Gaps = 45/158 (28%)
Query: 19 IDAGKTTTTERILY------------YAGKSHKIGEVHDG---SATMDWMEQEQERGITI 63
+D GK+T R+LY S K+G D + +D + E+E+GITI
Sbjct: 33 VDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITI 92
Query: 64 TSA----STTVFWPGRDGGQKKLTIIDTPGHVDFTMEVERSIRVT-----DGAIALLDSN 114
A +T ++K + DTPGH +T R++ VT D AI L+D+
Sbjct: 93 DVAYRYFATP---------KRKFIVADTPGHEQYT----RNM-VTGASTADLAIILVDAR 138
Query: 115 AGVEPQTETVWRQADKYS---VPRVIFC-NKMDKMGAD 148
GV QT R + S + V+ NKMD + D
Sbjct: 139 KGVLTQTR---RHSFIASLLGIRHVVLAVNKMDLVDYD 173
>gnl|CDD|179943 PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.
Length = 474
Score = 37.2 bits (87), Expect = 0.013
Identities = 37/125 (29%), Positives = 55/125 (44%), Gaps = 34/125 (27%)
Query: 19 IDAGKTTTTERILYYAGKSHKIGE-----VHDGSATM-------------DWMEQEQERG 60
+D GK+T R+L+ + +I E +H+ S D ++ E+E+G
Sbjct: 36 VDDGKSTLIGRLLH---DTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQG 92
Query: 61 ITITSA----STTVFWPGRDGGQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAG 116
ITI A ST ++K I DTPGH +T + D AI L+D+ G
Sbjct: 93 ITIDVAYRYFSTE---------KRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKG 143
Query: 117 VEPQT 121
V QT
Sbjct: 144 VLDQT 148
>gnl|CDD|163393 TIGR03680, eif2g_arch, translation initiation factor 2 subunit
gamma. eIF-2 functions in the early steps of protein
synthesis by forming a ternary complex with GTP and
initiator tRNA.
Length = 406
Score = 36.6 bits (85), Expect = 0.024
Identities = 31/133 (23%), Positives = 53/133 (39%), Gaps = 37/133 (27%)
Query: 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSAST-TV 70
N G++ H+D GKTT T+ + G T E E +RGI+I
Sbjct: 6 NIGMVGHVDHGKTTLTKAL--------------TGVWTDTHSE-ELKRGISIRLGYADAE 50
Query: 71 FW--PGRDGGQ------------------KKLTIIDTPGHVDFTMEVERSIRVTDGAIAL 110
+ P DG + ++++ +D PGH + + DGA+ +
Sbjct: 51 IYKCPECDGPECYTTEPVCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGALLV 110
Query: 111 LDSNAGV-EPQTE 122
+ +N +PQT+
Sbjct: 111 IAANEPCPQPQTK 123
>gnl|CDD|182508 PRK10512, PRK10512, selenocysteinyl-tRNA-specific translation
factor; Provisional.
Length = 614
Score = 35.0 bits (81), Expect = 0.059
Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 19/104 (18%)
Query: 18 HIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDG 77
H+D GKTT + I G D + +E++RG+TI +WP DG
Sbjct: 8 HVDHGKTTLLQAI--------------TGVNA-DRLPEEKKRGMTIDLGYA--YWPQPDG 50
Query: 78 GQKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQT 121
+ L ID PGH F + + D A+ ++ + GV QT
Sbjct: 51 --RVLGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVMAQT 92
>gnl|CDD|163343 TIGR03594, GTPase_EngA, ribosome-associated GTPase EngA. EngA
(YfgK, Der) is a ribosome-associated essential GTPase
with a duplication of its GTP-binding domain. It is
broadly to universally distributed among bacteria. It
appears to function in ribosome biogenesis or stability.
Length = 429
Score = 34.3 bits (80), Expect = 0.12
Identities = 23/97 (23%), Positives = 37/97 (38%), Gaps = 16/97 (16%)
Query: 60 GITITSASTTVFWPGRDGGQKKLTIIDTPG-----HVDFTME---VERSIRVTDGA---I 108
G T S G+ K +IDT G V +E V R+++ + A +
Sbjct: 205 GTTRDSIDIPFERNGK-----KYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVL 259
Query: 109 ALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKM 145
+LD+ G+ Q + + VI NK D +
Sbjct: 260 LVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDLV 296
Score = 28.9 bits (66), Expect = 5.0
Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 13/87 (14%)
Query: 78 GQKKLTIIDTPGHVDFTME--------VERSIRVTDGAIALLDSNAGVEPQTETVWRQAD 129
G ++ +IDT G + E +I D + ++D G+ P+ E + +
Sbjct: 45 GGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLR 104
Query: 130 KYSVPRVIFCNKMDKMG-----ADFYR 151
K P ++ NK+D A+FY
Sbjct: 105 KSGKPVILVANKIDGKKEDAVAAEFYS 131
>gnl|CDD|178858 PRK00093, PRK00093, GTP-binding protein Der; Reviewed.
Length = 435
Score = 31.9 bits (74), Expect = 0.50
Identities = 26/114 (22%), Positives = 43/114 (37%), Gaps = 17/114 (14%)
Query: 60 GITITSASTTVFWPGRDGGQKKLTIIDTPG-----HVDFTME---VERSIRVTDGA---I 108
G T S T +K T+IDT G V +E V R+++ + A +
Sbjct: 206 GTTRDSIDTPFER-----DGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVL 260
Query: 109 ALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKMGADFYRSVE-MISSRLG 161
++D+ G+ Q + A + VI NK D + + + RL
Sbjct: 261 LVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLVDEKTMEEFKKELRRRLP 314
Score = 28.5 bits (65), Expect = 5.6
Identities = 31/126 (24%), Positives = 50/126 (39%), Gaps = 35/126 (27%)
Query: 78 GQKKLTIIDTPGHVDFTMEVERSIRV-TDGAIA-------LLDSNAGVEPQTETV--W-R 126
++ +IDT G E+ IR + AI ++D AG+ P E + R
Sbjct: 47 LGREFILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILR 106
Query: 127 QADKYSVPRVIF-CNKMDKMG-----ADFYRSVEMISSRLGA-NPLVIQLPVGSESNFQG 179
+++K VI NK+D +FY LG P I S + +G
Sbjct: 107 KSNK----PVILVVNKVDGPDEEADAYEFY--------SLGLGEPYPI-----SAEHGRG 149
Query: 180 VIDLVE 185
+ DL++
Sbjct: 150 IGDLLD 155
>gnl|CDD|185031 PRK15071, PRK15071, lipopolysaccharide ABC transporter permease;
Provisional.
Length = 356
Score = 29.8 bits (68), Expect = 2.6
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 651 VPLSCMFKYVDSLRSMSQGRGQYTMI 676
V LS + K+VD LR + G+G Y +
Sbjct: 25 VGLSGIIKFVDQLRKV--GQGSYDAL 48
>gnl|CDD|150194 pfam09439, SRPRB, Signal recognition particle receptor beta
subunit. The beta subunit of the signal recognition
particle receptor (SRP) is a transmembrane GTPase which
anchors the alpha subunit to the endoplasmic reticulum
membrane.
Length = 181
Score = 29.7 bits (67), Expect = 3.0
Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 14/92 (15%)
Query: 80 KKLTIIDTPGHVDFTMEVERSIRVTDGAIALL---DSNAGVEPQTET--------VWRQA 128
LT+ID PGHV ++ +++ + L+ DS A + T+T +
Sbjct: 49 NSLTLIDFPGHVKLRYKLLETLKDSSSLRGLVFVVDSTAFPKEVTDTAEFLYDILSITEL 108
Query: 129 DKYSVPRVIFCNKMDKMGADFYRSVEMISSRL 160
K + +I CNK + A R + I L
Sbjct: 109 LKNGIDILIACNKQEIFTA---RPPKKIKQAL 137
>gnl|CDD|179703 PRK04000, PRK04000, translation initiation factor IF-2 subunit
gamma; Validated.
Length = 411
Score = 29.4 bits (67), Expect = 3.1
Identities = 34/136 (25%), Positives = 54/136 (39%), Gaps = 43/136 (31%)
Query: 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITIT--SASTT 69
N G++ H+D GKTT + + G T E E +RGITI A T
Sbjct: 11 NIGMVGHVDHGKTTLVQAL--------------TGVWTDRHSE-ELKRGITIRLGYADAT 55
Query: 70 VFW--PGRDGGQ------------------KKLTIIDTPGHVDF--TMEVERSIRVTDGA 107
P + + ++++ +D PGH TM ++ DGA
Sbjct: 56 -IRKCPDCEEPEAYTTEPKCPNCGSETELLRRVSFVDAPGHETLMATMLSGAAL--MDGA 112
Query: 108 IALLDSNAGV-EPQTE 122
I ++ +N +PQT+
Sbjct: 113 ILVIAANEPCPQPQTK 128
>gnl|CDD|180601 PRK06520, PRK06520,
5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferase; Provisional.
Length = 368
Score = 29.3 bits (66), Expect = 3.8
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 9/47 (19%)
Query: 515 KIAFEPN-PDGDDFVFESKIVGGAIPKEYIP--------GVRKGIES 552
K+ F + P +DF F I G A PK IP G RK I++
Sbjct: 109 KLDFPDDHPMLEDFRFLKSISGDATPKMTIPSPSVLHFRGGRKAIDA 155
>gnl|CDD|179486 PRK02862, glgC, glucose-1-phosphate adenylyltransferase;
Provisional.
Length = 429
Score = 29.1 bits (66), Expect = 4.0
Identities = 11/37 (29%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 145 MGADFYRSVEMISSRLGANPLVIQLPVGSESNFQGVI 181
MGADFY S E L +G + + I
Sbjct: 345 MGADFYESSEEREELRKEGK--PPLGIGEGTTIKRAI 379
>gnl|CDD|180246 PRK05766, rps14P, 30S ribosomal protein S14P; Reviewed.
Length = 52
Score = 28.3 bits (64), Expect = 6.3
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 591 RACFREAASKMG 602
R CFRE A K+G
Sbjct: 36 RQCFREVAPKLG 47
>gnl|CDD|128470 smart00173, RAS, Ras subfamily of RAS small GTPases. Similar in
fold and function to the bacterial EF-Tu GTPase. p21Ras
couples receptor Tyr kinases and G protein receptors to
protein kinase cascades.
Length = 164
Score = 27.9 bits (63), Expect = 9.6
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 76 DGGQKKLTIIDTPGHVDFTMEVERSIRVTDG-----AIALLDSNAGVEPQTETVWRQADK 130
DG L I+DT G +F+ ++ +R +G +I S ++ E + R D+
Sbjct: 44 DGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDR 103
Query: 131 YSVPRVIFCNKMD 143
VP V+ NK D
Sbjct: 104 DDVPIVLVGNKCD 116
>gnl|CDD|129479 TIGR00383, corA, magnesium Mg(2+) and cobalt Co(2+) transport
protein (corA). The article in Microb Comp Genomics
1998;3(3):151-69 (Medline:98448512) discusses this
family and suggests that some members may have functions
other than Mg2+ transport.
Length = 318
Score = 27.7 bits (62), Expect = 9.7
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 14/91 (15%)
Query: 182 DLVEMKALLWKNED-LGSSWDVVEIPEDMKDSANSYRD---------KMIESIVELDDSA 231
+L+ ++ LW D L +P ++ RD +MIE+ EL S
Sbjct: 183 ELLALRRSLWPLRDVLNFLLRKTHLPIQTEEVREYLRDIYDHILSLLEMIETYRELLSSL 242
Query: 232 MDSYLQGESFSSDRIRSLIRLGT-ISVKFFP 261
MD YL S ++++ ++++ T +S F P
Sbjct: 243 MDLYL---SLVNNKMNEIMKILTVVSTIFIP 270
>gnl|CDD|151421 pfam10974, DUF2804, Protein of unknown function (DUF2804). This is
a family of proteins with unknown function.
Length = 331
Score = 28.0 bits (63), Expect = 9.9
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
Query: 5 CKIEDSRNFGIMAHIDAG---KTTTTERILYYAGKSHKIGEVH 44
+++D R G+ ++ AG T TE L+ GK HK+G V
Sbjct: 213 GRLDDGRRIGL--NLAAGVNEGTGATENALWIDGKLHKLGPVE 253
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.317 0.134 0.384
Gapped
Lambda K H
0.267 0.0704 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 11,378,956
Number of extensions: 753975
Number of successful extensions: 1608
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1509
Number of HSP's successfully gapped: 76
Length of query: 701
Length of database: 5,994,473
Length adjustment: 100
Effective length of query: 601
Effective length of database: 3,833,673
Effective search space: 2304037473
Effective search space used: 2304037473
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.3 bits)