HHsearch alignment of GI: 254780265 and MMDB domain: 2noq_F_
>2noq_F (F:) L10A, 40S ribosomal protein S5; IRES RNA, ribosome, translation, internal initiation; 7.30A {Saccharomyces cerevisiae} PDB: 1s1h_G
Probab=100.00 E-value=0 Score=326.89 Aligned_cols=145 Identities=26% Similarity=0.338 Sum_probs=140.6
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEEECCCC
Q ss_conf 99975557999743787999999999766959999999999998667424886389999999842754047787524630
Q gi|254780265|r 5 RRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALINVTPQFEVRTRRVGGAA 84 (156)
Q Consensus 5 ~~~~kr~~~pD~~y~~~lv~kliN~lMk~GKK~~A~kIv~~al~~I~~~~~~npi~il~~Ai~n~~P~~evk~~r~gG~~ 84 (156)
+++++|+.+|||+|+|++|++|||++|++|||++|++|+++||++|++.|++||+++|++||+||+|.+||+++++||.+
T Consensus 1 r~a~kr~~~~d~~~~~~li~klin~~m~~GKK~~A~ki~~~al~~i~~~~~~nPi~vl~~Ai~N~~P~~ev~~~r~gG~~ 80 (150)
T 2noq_F 1 RYANKRFRKAQCPIIERLTNSLMMNGRNNGKKLKAVRIIKHTLDIINVLTDQNPIQVVVDAITNTGPREDTTRVGGGGAA 80 (150)
T ss_dssp CCSCCCCCCCCSSSCCHHHHHHHHHHCCTTCHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHCCSEEEEEEECSSSE
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCEEEEEEEEECCEE
T ss_conf 97432367556868999999988745457649999999999999999736898607899999861353777998755623
Q ss_pred EECEEECCHHHHHHHHHHHHHHHHHHCCC---CCHHHHHHHHHHHHHCCCCC--CEECHHHHHHHHHHHH
Q ss_conf 00001048579999999999999985799---99899999999999738887--2630788999999988
Q gi|254780265|r 85 YSVPGEITSKRSQALAIRWLIMAARKRNE---TTMIDRLGGEIIDAANNRGV--AVRKREETHKVAEANR 149 (156)
Q Consensus 85 yqvP~~i~~~r~~~lAirWii~~a~~r~~---~~~~~~La~Eii~A~~~~g~--aikkK~elhk~A~aNR 149 (156)
||||+++++.|++++|||||+++|+++++ ++|+++||+||++|++|+|. |++||+|+||||++||
T Consensus 81 ~qvPv~i~~~r~~~lAirWil~~ar~r~~~~~~~~~~~La~Eli~A~~~~G~s~aikKK~elhk~AeaNR 150 (150)
T 2noq_F 81 RRQAVDVSPLRRVNQAIALLTIGAREAAFRNIKTIAETLAEELINAAKGSSTSYAIKKKDELERVAKSNR 150 (150)
T ss_dssp EEEEEECCHHHHHHHHHHHHHHHHHHCSCCCSSSSHHHHHHHHHHHSSTTCCSHHHHHHHHHHHHTTTTC
T ss_pred EEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 4665776828989999999999999862489888899999999999837898403136889999998568