Query gi|254780265|ref|YP_003064678.1| 30S ribosomal protein S7 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 156 No_of_seqs 109 out of 1439 Neff 6.0 Searched_HMMs 33803 Date Tue May 24 09:20:51 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780265.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >3i1m_G 30S ribosomal protein 100.0 0 0 371.7 13.7 156 1-156 1-156 (179) 2 >1hus_A Ribosomal protein S7; 100.0 0 0 361.0 14.9 155 2-156 1-155 (155) 3 >3bbn_G Ribosomal protein S7; 100.0 0 0 360.7 7.7 155 1-155 1-155 (155) 4 >3gty_S TF, 30S ribosomal prot 100.0 0 0 350.5 13.8 148 9-156 2-149 (149) 5 >2noq_F L10A, 40S ribosomal pr 100.0 0 0 326.9 14.8 145 5-149 1-150 (150) 6 >2zkq_g 40S ribosomal protein 100.0 0 0 316.2 11.1 149 1-149 51-204 (204) 7 >1rss_A Ribosomal protein S7; 100.0 0 0 307.4 14.5 150 7-156 2-151 (151) 8 >1iqv_A Ribosomal protein S7; 100.0 0 0 303.5 9.4 143 7-149 71-218 (218) 9 >2q7d_A Inositol-tetrakisphosp 34.9 32 0.00095 15.5 2.9 65 84-148 18-99 (111) 10 >1u5t_A Appears to BE function 17.6 68 0.002 13.5 2.2 32 59-90 54-85 (86) No 1 >>3i1m_G 30S ribosomal protein S7; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_G* 3e1a_U 3e1c_U 1vs5_G 3i1o_G 3i1q_G 3i1s_G 3i1z_G 3i21_G 2qal_G* 1p6g_G 1p87_G 2aw7_G 2avy_G 2i2u_G 2i2p_G* 2qan_G* 2qb9_G* 2qbb_G* 2qbd_G ... (G:) Probab=100.00 E-value=0 Score=371.70 Aligned_cols=156 Identities=51% Similarity=0.855 Sum_probs=155.7 Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEEE Q ss_conf 98989997555799974378799999999976695999999999999866742488638999999984275404778752 Q gi|254780265|r 1 MSRRRRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALINVTPQFEVRTRRV 80 (156) Q Consensus 1 m~Rr~~~~kr~~~pD~~y~~~lv~kliN~lMk~GKK~~A~kIv~~al~~I~~~~~~npi~il~~Ai~n~~P~~evk~~r~ 80 (156) ||||++++++..+|||+|+|++|++|||++|++|||++|++|++++|++|+..|++||+++|++||+|++|.+||+++++ T Consensus 1 Msr~~~~~k~~~~~d~~~~~~lv~klin~lmk~GKK~~A~kIv~~al~~I~~~t~~nPi~il~~Ai~Nv~P~~ev~~ik~ 80 (179) T 3i1m_G 1 MPRRRVIGQRKILPDPKFGSELLAKFVNILMVDGKKSTAESIVYSALETLAQRSGKSELEAFEVALENVRPTVEVKSRRV 80 (179) T ss_dssp -CCSCCCCCCCCCCCTTTCCHHHHHHHHHHCCTTCHHHHHHHHHHHHHHHHHHHCSCSHHHHHHHHHHHCCSEEEECCCC T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEEEEEEEE T ss_conf 97999998787999976587999999999875641999999999999998873467640689999985356057886641 Q ss_pred CCCCEECEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHHHCCCC Q ss_conf 4630000010485799999999999999857999989999999999973888726307889999999888532569 Q gi|254780265|r 81 GGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRLGGEIIDAANNRGVAVRKREETHKVAEANRAFSHYRW 156 (156) Q Consensus 81 gG~~yqvP~~i~~~r~~~lAirWii~~a~~r~~~~~~~~La~Eii~A~~~~g~aikkK~elhk~A~aNRa~ah~Rw 156 (156) ||++||||++|++.|++++||+||+++|+++++++|+++||+||++|++++|.|++||||+||+|++||||+|||| T Consensus 81 gG~~y~vP~~i~~~rr~~lAirWll~~a~~r~~k~~~~~La~Eii~A~~~~G~aikKK~elhK~A~aNRa~ah~Rw 156 (179) T 3i1m_G 81 GGSTYQVPVEVRPVRRNALAMRWIVEAARKRGDKSMALRLANELSDAAENKGTAVKKREDVHRMAEANKAFAHYRW 156 (179) T ss_dssp SSSCCCEEEECCTTHHHHHHHHHHHHHHTTCCSSSHHHHHHHHHHHHHTSCSHHHHHHHHHHHHTTTGGGGC---- T ss_pred CCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHH T ss_conf 7744323232381889999999999988743899899999999999994889666628999999999999998898 No 2 >>1hus_A Ribosomal protein S7; RNA-binding protein, decoding center,; 2.50A {Geobacillus stearothermophilus} (A:) Probab=100.00 E-value=0 Score=360.97 Aligned_cols=155 Identities=54% Similarity=0.881 Sum_probs=154.3 Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEEEC Q ss_conf 89899975557999743787999999999766959999999999998667424886389999999842754047787524 Q gi|254780265|r 2 SRRRRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALINVTPQFEVRTRRVG 81 (156) Q Consensus 2 ~Rr~~~~kr~~~pD~~y~~~lv~kliN~lMk~GKK~~A~kIv~~al~~I~~~~~~npi~il~~Ai~n~~P~~evk~~r~g 81 (156) |||+++.++..++||+|+|++|++|||++|++|||++|++|++++|++|+..+++||+++|++||+|++|.+||+++++| T Consensus 1 s~~~~~~k~~~~~~~~~~~~li~klin~~mk~GKK~~A~~i~~~~l~~i~~~~~~np~~il~~Ai~n~~P~~ev~~~k~g 80 (155) T 1hus_A 1 PRRGPVAKRDVLPDPIYNSKLVTRLINKIXIDGKKSKAQKILYTAFDIIRERTGKDPXEVFEQALKNVXPVLEVRARRVG 80 (155) T ss_dssp --------CCCCCCTTTCCHHHHHHHHHHCCTTCHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHCCSEEEECCEET T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEECCCC T ss_conf 99987876889999664888999999997565359999999999999999853775089999999967872135521548 Q ss_pred CCCEECEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHHHCCCC Q ss_conf 630000010485799999999999999857999989999999999973888726307889999999888532569 Q gi|254780265|r 82 GAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRLGGEIIDAANNRGVAVRKREETHKVAEANRAFSHYRW 156 (156) Q Consensus 82 G~~yqvP~~i~~~r~~~lAirWii~~a~~r~~~~~~~~La~Eii~A~~~~g~aikkK~elhk~A~aNRa~ah~Rw 156 (156) |.+||||+|+++.|++++||+||+++|+++++++|+++|+.||++|++|+|.|++||+|+||+|++||||+|||| T Consensus 81 g~~~~vP~~i~~~r~~~lAirWll~~~~~k~~k~~~~~La~Eii~A~~~~G~aikKK~elhk~A~aNRa~~h~Rw 155 (155) T 1hus_A 81 GANYQVPVEVRPDRRVSLGLRWLVQYARLRNEKTXEERLANEIXDAANNTGAAVKKREDTHKXAEANKAFAHYRW 155 (155) T ss_dssp TEECCEEEECCHHHHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHHC-------- T ss_pred CCCEEEEEEECHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCC T ss_conf 721313366078899999999999999875999869999999999994788401138999999999787750179 No 3 >>3bbn_G Ribosomal protein S7; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} (G:) Probab=100.00 E-value=0 Score=360.70 Aligned_cols=155 Identities=46% Similarity=0.724 Sum_probs=154.6 Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEEE Q ss_conf 98989997555799974378799999999976695999999999999866742488638999999984275404778752 Q gi|254780265|r 1 MSRRRRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALINVTPQFEVRTRRV 80 (156) Q Consensus 1 m~Rr~~~~kr~~~pD~~y~~~lv~kliN~lMk~GKK~~A~kIv~~al~~I~~~~~~npi~il~~Ai~n~~P~~evk~~r~ 80 (156) |||++.+++++.++||+|+|++|++|+|++|++|||++|++|++++|++|+++|++||+++|++||+|++|.+||+++++ T Consensus 1 ms~~~~~kk~~~~~~~~~~~~li~k~in~lm~~GKK~~A~~i~~~al~~i~~~~~~nPi~il~~Ai~N~~P~~ev~~~k~ 80 (155) T 3bbn_G 1 MSRRGTVEEKTAKSDPIYRNRLVNMLVNRILKHGKKSLAYQILYRAVKKIQQKTETNPLSVLRQAIRGVTPDIAVKARRV 80 (155) T ss_dssp -CCSSCCCCCCCCCCTTTCCSSGGGHHHHSCCTTCHHHHHHHHSHHHHTTTTTCSSCTTHHHHHHGGGTCCSEEECCEEE T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEEEEE T ss_conf 97999898788999988687999999999985232999999999999989874588728999999993599652343540 Q ss_pred CCCCEECEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHHHCCC Q ss_conf 463000001048579999999999999985799998999999999997388872630788999999988853256 Q gi|254780265|r 81 GGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRLGGEIIDAANNRGVAVRKREETHKVAEANRAFSHYR 155 (156) Q Consensus 81 gG~~yqvP~~i~~~r~~~lAirWii~~a~~r~~~~~~~~La~Eii~A~~~~g~aikkK~elhk~A~aNRa~ah~R 155 (156) ||.+||||+|+++.||+++|||||+++|++|++.+|+++||+||++|++|+|.|++||+|+||+|++||||+||| T Consensus 81 gg~~~~vPv~i~~~rr~~lAirwil~~a~~k~~~~~~~~La~Eli~A~~~~g~aikkK~elhk~A~aNRa~~h~R 155 (155) T 3bbn_G 81 GGSTHQVPIEIGSTQGKALAIRWLLGAARKRPGRNMAFKLSSELVDAAKGSGDAVRKKEETHRMAEANRAFAHFR 155 (155) T ss_dssp TTEEECCEEECCHHHHHHHHTTHHHHHHHTCCSSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSSSSGGGSCCC T ss_pred CCCCCEEEEEECHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHCCC T ss_conf 870320015767899999999999999986689988999999999998388861232889999999987664369 No 4 >>3gty_S TF, 30S ribosomal protein S7; chaperone-client complex, cell cycle, cell division, chaperone, isomerase, rotamase, ribonucleoprotein; 3.40A {Thermotoga maritima} (S:) Probab=100.00 E-value=0 Score=350.47 Aligned_cols=148 Identities=54% Similarity=0.954 Sum_probs=146.8 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCEECE Q ss_conf 55579997437879999999997669599999999999986674248863899999998427540477875246300000 Q gi|254780265|r 9 VREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALINVTPQFEVRTRRVGGAAYSVP 88 (156) Q Consensus 9 kr~~~pD~~y~~~lv~kliN~lMk~GKK~~A~kIv~~al~~I~~~~~~npi~il~~Ai~n~~P~~evk~~r~gG~~yqvP 88 (156) |+..+|||+|+|++|++|||+||++|||++|++|++++|++|+..+++||+++|++||+|++|.+||+++++||.+|||| T Consensus 2 k~~~~~d~~~~~~lv~klin~lmk~GKK~~A~~i~~~al~~i~~~~~~npi~il~~ai~n~~P~~~v~~~k~gg~~~~vP 81 (149) T 3gty_S 2 GRQIPPDPVFGDVLVAKLINRVMWDGKKTIAQKIVYGAFDIIREKTKKDPLEVFRQAVENVKPVLEVRPRRVGGATYQVP 81 (149) T ss_dssp CCCCCCCSSSCCHHHHHHHHHHCBTTBTTTHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHCCSEEEEEECSSSSCEEEE T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCEEEEEECCEEEEEC T ss_conf 78589986658889999999998724399999999999999987356643799999998078831001144488857825 Q ss_pred EECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHHHCCCC Q ss_conf 10485799999999999999857999989999999999973888726307889999999888532569 Q gi|254780265|r 89 GEITSKRSQALAIRWLIMAARKRNETTMIDRLGGEIIDAANNRGVAVRKREETHKVAEANRAFSHYRW 156 (156) Q Consensus 89 ~~i~~~r~~~lAirWii~~a~~r~~~~~~~~La~Eii~A~~~~g~aikkK~elhk~A~aNRa~ah~Rw 156 (156) +|+++.||+++||+||++++++|++++|+++|++||++|++|+|.|++||+|+||+|++||||+|||| T Consensus 82 ~~i~~~rr~~lAikwll~~~~~r~~k~~~~~La~Eii~a~~~~g~aikkK~elhK~A~aNRa~~h~Rw 149 (149) T 3gty_S 82 IEVQEPRRTSLALRWIVEAARAKKGRPMKEKLAEEIIAAYNNTGTAIKKKEDTHRMAEANRAFAHYRW 149 (149) T ss_dssp EECCTHHHHHHHHHHHHHHHHTCSSSCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHTTSGGGCTTCC T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHCCCC T ss_conf 86788899999999999999875999899999999999980888531239999999999774610379 No 5 >>2noq_F L10A, 40S ribosomal protein S5; IRES RNA, ribosome, translation, internal initiation; 7.30A {Saccharomyces cerevisiae} PDB: 1s1h_G (F:) Probab=100.00 E-value=0 Score=326.89 Aligned_cols=145 Identities=26% Similarity=0.338 Sum_probs=140.6 Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEEECCCC Q ss_conf 99975557999743787999999999766959999999999998667424886389999999842754047787524630 Q gi|254780265|r 5 RRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALINVTPQFEVRTRRVGGAA 84 (156) Q Consensus 5 ~~~~kr~~~pD~~y~~~lv~kliN~lMk~GKK~~A~kIv~~al~~I~~~~~~npi~il~~Ai~n~~P~~evk~~r~gG~~ 84 (156) +++++|+.+|||+|+|++|++|||++|++|||++|++|+++||++|++.|++||+++|++||+||+|.+||+++++||.+ T Consensus 1 r~a~kr~~~~d~~~~~~li~klin~~m~~GKK~~A~ki~~~al~~i~~~~~~nPi~vl~~Ai~N~~P~~ev~~~r~gG~~ 80 (150) T 2noq_F 1 RYANKRFRKAQCPIIERLTNSLMMNGRNNGKKLKAVRIIKHTLDIINVLTDQNPIQVVVDAITNTGPREDTTRVGGGGAA 80 (150) T ss_dssp CCSCCCCCCCCSSSCCHHHHHHHHHHCCTTCHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHCCSEEEEEEECSSSE T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCEEEEEEEEECCEE T ss_conf 97432367556868999999988745457649999999999999999736898607899999861353777998755623 Q ss_pred EECEEECCHHHHHHHHHHHHHHHHHHCCC---CCHHHHHHHHHHHHHCCCCC--CEECHHHHHHHHHHHH Q ss_conf 00001048579999999999999985799---99899999999999738887--2630788999999988 Q gi|254780265|r 85 YSVPGEITSKRSQALAIRWLIMAARKRNE---TTMIDRLGGEIIDAANNRGV--AVRKREETHKVAEANR 149 (156) Q Consensus 85 yqvP~~i~~~r~~~lAirWii~~a~~r~~---~~~~~~La~Eii~A~~~~g~--aikkK~elhk~A~aNR 149 (156) ||||+++++.|++++|||||+++|+++++ ++|+++||+||++|++|+|. |++||+|+||||++|| T Consensus 81 ~qvPv~i~~~r~~~lAirWil~~ar~r~~~~~~~~~~~La~Eli~A~~~~G~s~aikKK~elhk~AeaNR 150 (150) T 2noq_F 81 RRQAVDVSPLRRVNQAIALLTIGAREAAFRNIKTIAETLAEELINAAKGSSTSYAIKKKDELERVAKSNR 150 (150) T ss_dssp EEEEEECCHHHHHHHHHHHHHHHHHHCSCCCSSSSHHHHHHHHHHHSSTTCCSHHHHHHHHHHHHTTTTC T ss_pred EEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC T ss_conf 4665776828989999999999999862489888899999999999837898403136889999998568 No 6 >>2zkq_g 40S ribosomal protein S5E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} (g:) Probab=100.00 E-value=0 Score=316.24 Aligned_cols=149 Identities=26% Similarity=0.312 Sum_probs=144.5 Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEEE Q ss_conf 98989997555799974378799999999976695999999999999866742488638999999984275404778752 Q gi|254780265|r 1 MSRRRRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALINVTPQFEVRTRRV 80 (156) Q Consensus 1 m~Rr~~~~kr~~~pD~~y~~~lv~kliN~lMk~GKK~~A~kIv~~al~~I~~~~~~npi~il~~Ai~n~~P~~evk~~r~ 80 (156) |+|+..+.+++.++|+.|+|+||++|+|++|++|||++|++|++.||++|+..|++||++||++||+||+|.+||+++++ T Consensus 51 ~~~~~~~~k~~~~~~~~~~d~lv~klin~~m~~GKK~~A~~iv~~a~~~I~~~t~~nPi~vl~~AI~N~~P~~ev~~~~~ 130 (204) T 2zkq_g 51 HSAGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGR 130 (204) T ss_dssp ------------CCCHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHSCSCEEEEEEE T ss_pred CHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCEEEEEEEE T ss_conf 42425553120122146999999999998874547889999999999999986189906889999980364304588753 Q ss_pred CCCCEECEEECCHHHHHHHHHHHHHHHHHHCC---CCCHHHHHHHHHHHHHCCCCC--CEECHHHHHHHHHHHH Q ss_conf 46300000104857999999999999998579---999899999999999738887--2630788999999988 Q gi|254780265|r 81 GGAAYSVPGEITSKRSQALAIRWLIMAARKRN---ETTMIDRLGGEIIDAANNRGV--AVRKREETHKVAEANR 149 (156) Q Consensus 81 gG~~yqvP~~i~~~r~~~lAirWii~~a~~r~---~~~~~~~La~Eii~A~~~~g~--aikkK~elhk~A~aNR 149 (156) ||.+||||++|++.||+++|||||+++|++++ .++|+++||+||++|++|+|. |++||+|+||+|+||| T Consensus 131 gG~~~~vPv~is~~rr~~lAirwil~~ar~~~~~~~k~~~~~La~Eii~A~~~~g~s~aikKKeelhk~AeaNR 204 (204) T 2zkq_g 131 AGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 204 (204) T ss_dssp TTEEEEEEEC-CHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHC-CTTCCC-CHHHHHHHHHHHHHHHCC T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHCC T ss_conf 58326600423818999999999999998742579886999999999999808899621324788999998568 No 7 >>1rss_A Ribosomal protein S7; RNA-binding, translation; 1.90A {Thermus thermophilus} (A:) Probab=100.00 E-value=0 Score=307.44 Aligned_cols=150 Identities=47% Similarity=0.844 Sum_probs=148.5 Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCEE Q ss_conf 97555799974378799999999976695999999999999866742488638999999984275404778752463000 Q gi|254780265|r 7 AVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALINVTPQFEVRTRRVGGAAYS 86 (156) Q Consensus 7 ~~kr~~~pD~~y~~~lv~kliN~lMk~GKK~~A~kIv~~al~~I~~~~~~npi~il~~Ai~n~~P~~evk~~r~gG~~yq 86 (156) |+++...|||+|++++|++|+|.+|++|||++|++|++.+|++|+.+++.||+.+++.||.|++|.++++++++||.+|| T Consensus 2 a~k~~~~~~~~~~~~lv~k~~n~lm~~gkk~~a~~ii~~~~~~l~~~~k~nPi~i~~~av~n~~p~~~l~~~~~~g~~~~ 81 (151) T 1rss_A 2 AEVRQLQPDLVYGDVLVTAFINKIMRDGKKNLAARIFYDACKIIQEKTGQEPLKVFKQAVENVKPRMEVRSRRVGGANYQ 81 (151) T ss_dssp -----CCCCTTTCCHHHHHHHHHHCCTTCHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHCCSEEEEEEEETTEEEE T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHEEEEEEECCCCCC T ss_conf 98676899977698899999999875345999999999999988860588622589999998532450344653872211 Q ss_pred CEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHHHCCCC Q ss_conf 0010485799999999999999857999989999999999973888726307889999999888532569 Q gi|254780265|r 87 VPGEITSKRSQALAIRWLIMAARKRNETTMIDRLGGEIIDAANNRGVAVRKREETHKVAEANRAFSHYRW 156 (156) Q Consensus 87 vP~~i~~~r~~~lAirWii~~a~~r~~~~~~~~La~Eii~A~~~~g~aikkK~elhk~A~aNRa~ah~Rw 156 (156) ||+++++.|+.++||+||+++++.|++++|+++|++||++|++++|.+++++||+|++|++||||+|||| T Consensus 82 vP~~l~~~r~~~lai~wli~~~~~r~~~~~~~~l~~ei~~a~~~~g~~i~~kdElHkla~anra~~~~r~ 151 (151) T 1rss_A 82 VPMEVSPRRQQSLALRWLVQAANQRPERRAAVRIAHELMDAAEGKGGAVKKKEDVERMAEANRAYAHYRW 151 (151) T ss_dssp EEEECCHHHHHHHHHHHHHHHHTTSSCSSHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHCC-----CSCC T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHCCCC T ss_conf 3625694899999999999999875887399999999999972888631219999999999775601489 No 8 >>1iqv_A Ribosomal protein S7; RNA-binding, decoding center, helix-turn- helix, ribosome; 2.10A {Pyrococcus horikoshii} (A:) Probab=100.00 E-value=0 Score=303.51 Aligned_cols=143 Identities=24% Similarity=0.295 Sum_probs=135.1 Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCEE Q ss_conf 97555799974378799999999976695999999999999866742488638999999984275404778752463000 Q gi|254780265|r 7 AVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALINVTPQFEVRTRRVGGAAYS 86 (156) Q Consensus 7 ~~kr~~~pD~~y~~~lv~kliN~lMk~GKK~~A~kIv~~al~~I~~~~~~npi~il~~Ai~n~~P~~evk~~r~gG~~yq 86 (156) +.+....+||.|+|++|++|+|++|++|||++|++|++.+|++|+.+|++||+++|++||+|++|.+|++++++||.+|| T Consensus 71 ~~~~~~~~~~~~~~~lv~~~~n~lm~~GKK~~A~kiv~~a~~~i~~~t~~nPi~vl~~Ai~N~~P~~ev~~~~~GG~~~~ 150 (218) T 1iqv_A 71 INKVMRSGGSHYKVAGHFMRREHRSLNSKKVRAYEVVKEAFKIIEKRTGKNPIQVLVWAIENAAPREDTTSVMFGGIRYH 150 (218) T ss_dssp HHHHHTTCCC-----------------CHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHSCSCEEEEEEETTEEEE T ss_pred HHHHHHCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHEEEEECCCEEEE T ss_conf 98874345543333441000002457773999999999999999984589869999999996798112057533987887 Q ss_pred CEEECCHHHHHHHHHHHHHHHHHHCC---CCCHHHHHHHHHHHHHCCC--CCCEECHHHHHHHHHHHH Q ss_conf 00104857999999999999998579---9998999999999997388--872630788999999988 Q gi|254780265|r 87 VPGEITSKRSQALAIRWLIMAARKRN---ETTMIDRLGGEIIDAANNR--GVAVRKREETHKVAEANR 149 (156) Q Consensus 87 vP~~i~~~r~~~lAirWii~~a~~r~---~~~~~~~La~Eii~A~~~~--g~aikkK~elhk~A~aNR 149 (156) ||+|+++.||+++||+||+++|++++ .++|+++||+||++|++|+ |.|++||+|+||+|++|| T Consensus 151 vPv~is~~rr~~lAirwIl~~a~~r~~~~~~~~~~~LA~Eii~Aa~~~gks~aikKK~elhk~A~aNR 218 (218) T 1iqv_A 151 VAVDISPLRRLDVALRNIALGASAKCYRTKMSFAEALAEEIILAANKDPKSYAYSKKLEIERIAESSR 218 (218) T ss_dssp EEECCCHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHCC T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHCC T ss_conf 27242688999999999999999864678888999999999999758888646652688999898568 No 9 >>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4- 5/6-kinase, inositol phosphate, inositolphosphate, polyphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X (A:1-111) Probab=34.88 E-value=32 Score=15.46 Aligned_cols=65 Identities=18% Similarity=0.236 Sum_probs=50.9 Q ss_pred CEECEEECCHHHHHHHHHHHHHHHHHHCC--------CCCH---------HHHHHHHHHHHHCCCCCCEECHHHHHHHHH Q ss_conf 00000104857999999999999998579--------9998---------999999999997388872630788999999 Q gi|254780265|r 84 AYSVPGEITSKRSQALAIRWLIMAARKRN--------ETTM---------IDRLGGEIIDAANNRGVAVRKREETHKVAE 146 (156) Q Consensus 84 ~yqvP~~i~~~r~~~lAirWii~~a~~r~--------~~~~---------~~~La~Eii~A~~~~g~aikkK~elhk~A~ 146 (156) .+-|-+.+++++..++-.--+++.|++++ .+++ -.+|.+||+.|..|...+-.-..++....+ T Consensus 18 ~~~VGY~l~~kK~~~f~~~~l~~~~~~~Gi~lV~ID~~~pL~~QGPfDvIlHKltD~i~~~~~~d~~~~~~~~~l~~Y~~ 97 (111) T 2q7d_A 18 GKRVGYWLSEKKIKKLNFQAFAELCRKRGMEVVQLNLSRPIEEQGPLDVIIHKLTDVILEADQNDSQSLELVHRFQEYID 97 (111) T ss_dssp TCEEEEECCHHHHHHHTHHHHHHHHHTTTCEEEECCTTSCSGGGCCCSEEEECCHHHHHHHHTTCHHHHHHHHHHHHHHH T ss_pred CCEEEEEECCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHCCCCEEEEECCHHHHHHHCCCCCCCHHHHHHHHHHHH T ss_conf 67699998802554523999999999789979996499995674984599976547765303576421489999999886 Q ss_pred HH Q ss_conf 98 Q gi|254780265|r 147 AN 148 (156) Q Consensus 147 aN 148 (156) ++ T Consensus 98 ~H 99 (111) T 2q7d_A 98 AH 99 (111) T ss_dssp HC T ss_pred HC T ss_conf 48 No 10 >>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} (A:78-163) Probab=17.57 E-value=68 Score=13.48 Aligned_cols=32 Identities=3% Similarity=-0.031 Sum_probs=26.5 Q ss_pred HHHHHHHHHHCCCCEEEEEEEECCCCEECEEE Q ss_conf 89999999842754047787524630000010 Q gi|254780265|r 59 VALFRQALINVTPQFEVRTRRVGGAAYSVPGE 90 (156) Q Consensus 59 i~il~~Ai~n~~P~~evk~~r~gG~~yqvP~~ 90 (156) -.=+.+||...+|+=...-..+||..|-..+| T Consensus 54 ~dDi~rAi~~L~~LGGf~vi~iggk~~v~SVP 85 (86) T 1u5t_A 54 LDDLEKSIDMLKSLECFEIFQIRGKKFLRSVP 85 (86) T ss_dssp HHHHHHHHHHHTTTCCCCEEEETTEEEECCSS T ss_pred HHHHHHHHHHHHHCCCCEEEEECCEEEEEECC T ss_conf 99999999998734286699989999998178 Done!