Query         gi|254780265|ref|YP_003064678.1| 30S ribosomal protein S7 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 156
No_of_seqs    109 out of 1439
Neff          6.0 
Searched_HMMs 33803
Date          Tue May 24 09:20:51 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780265.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >3i1m_G 30S ribosomal protein  100.0       0       0  371.7  13.7  156    1-156     1-156 (179)
  2 >1hus_A Ribosomal protein S7;  100.0       0       0  361.0  14.9  155    2-156     1-155 (155)
  3 >3bbn_G Ribosomal protein S7;  100.0       0       0  360.7   7.7  155    1-155     1-155 (155)
  4 >3gty_S TF, 30S ribosomal prot 100.0       0       0  350.5  13.8  148    9-156     2-149 (149)
  5 >2noq_F L10A, 40S ribosomal pr 100.0       0       0  326.9  14.8  145    5-149     1-150 (150)
  6 >2zkq_g 40S ribosomal protein  100.0       0       0  316.2  11.1  149    1-149    51-204 (204)
  7 >1rss_A Ribosomal protein S7;  100.0       0       0  307.4  14.5  150    7-156     2-151 (151)
  8 >1iqv_A Ribosomal protein S7;  100.0       0       0  303.5   9.4  143    7-149    71-218 (218)
  9 >2q7d_A Inositol-tetrakisphosp  34.9      32 0.00095   15.5   2.9   65   84-148    18-99  (111)
 10 >1u5t_A Appears to BE function  17.6      68   0.002   13.5   2.2   32   59-90     54-85  (86)

No 1  
>>3i1m_G 30S ribosomal protein S7; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_G* 3e1a_U 3e1c_U 1vs5_G 3i1o_G 3i1q_G 3i1s_G 3i1z_G 3i21_G 2qal_G* 1p6g_G 1p87_G 2aw7_G 2avy_G 2i2u_G 2i2p_G* 2qan_G* 2qb9_G* 2qbb_G* 2qbd_G ... (G:)
Probab=100.00  E-value=0  Score=371.70  Aligned_cols=156  Identities=51%  Similarity=0.855  Sum_probs=155.7

Q ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEEE
Q ss_conf             98989997555799974378799999999976695999999999999866742488638999999984275404778752
Q gi|254780265|r    1 MSRRRRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALINVTPQFEVRTRRV   80 (156)
Q Consensus         1 m~Rr~~~~kr~~~pD~~y~~~lv~kliN~lMk~GKK~~A~kIv~~al~~I~~~~~~npi~il~~Ai~n~~P~~evk~~r~   80 (156)
                      ||||++++++..+|||+|+|++|++|||++|++|||++|++|++++|++|+..|++||+++|++||+|++|.+||+++++
T Consensus         1 Msr~~~~~k~~~~~d~~~~~~lv~klin~lmk~GKK~~A~kIv~~al~~I~~~t~~nPi~il~~Ai~Nv~P~~ev~~ik~   80 (179)
T 3i1m_G            1 MPRRRVIGQRKILPDPKFGSELLAKFVNILMVDGKKSTAESIVYSALETLAQRSGKSELEAFEVALENVRPTVEVKSRRV   80 (179)
T ss_dssp             -CCSCCCCCCCCCCCTTTCCHHHHHHHHHHCCTTCHHHHHHHHHHHHHHHHHHHCSCSHHHHHHHHHHHCCSEEEECCCC
T ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEEEEEEEE
T ss_conf             97999998787999976587999999999875641999999999999998873467640689999985356057886641


Q ss_pred             CCCCEECEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHHHCCCC
Q ss_conf             4630000010485799999999999999857999989999999999973888726307889999999888532569
Q gi|254780265|r   81 GGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRLGGEIIDAANNRGVAVRKREETHKVAEANRAFSHYRW  156 (156)
Q Consensus        81 gG~~yqvP~~i~~~r~~~lAirWii~~a~~r~~~~~~~~La~Eii~A~~~~g~aikkK~elhk~A~aNRa~ah~Rw  156 (156)
                      ||++||||++|++.|++++||+||+++|+++++++|+++||+||++|++++|.|++||||+||+|++||||+||||
T Consensus        81 gG~~y~vP~~i~~~rr~~lAirWll~~a~~r~~k~~~~~La~Eii~A~~~~G~aikKK~elhK~A~aNRa~ah~Rw  156 (179)
T 3i1m_G           81 GGSTYQVPVEVRPVRRNALAMRWIVEAARKRGDKSMALRLANELSDAAENKGTAVKKREDVHRMAEANKAFAHYRW  156 (179)
T ss_dssp             SSSCCCEEEECCTTHHHHHHHHHHHHHHTTCCSSSHHHHHHHHHHHHHTSCSHHHHHHHHHHHHTTTGGGGC----
T ss_pred             CCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHH
T ss_conf             7744323232381889999999999988743899899999999999994889666628999999999999998898


No 2  
>>1hus_A Ribosomal protein S7; RNA-binding protein, decoding center,; 2.50A {Geobacillus stearothermophilus} (A:)
Probab=100.00  E-value=0  Score=360.97  Aligned_cols=155  Identities=54%  Similarity=0.881  Sum_probs=154.3

Q ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEEEC
Q ss_conf             89899975557999743787999999999766959999999999998667424886389999999842754047787524
Q gi|254780265|r    2 SRRRRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALINVTPQFEVRTRRVG   81 (156)
Q Consensus         2 ~Rr~~~~kr~~~pD~~y~~~lv~kliN~lMk~GKK~~A~kIv~~al~~I~~~~~~npi~il~~Ai~n~~P~~evk~~r~g   81 (156)
                      |||+++.++..++||+|+|++|++|||++|++|||++|++|++++|++|+..+++||+++|++||+|++|.+||+++++|
T Consensus         1 s~~~~~~k~~~~~~~~~~~~li~klin~~mk~GKK~~A~~i~~~~l~~i~~~~~~np~~il~~Ai~n~~P~~ev~~~k~g   80 (155)
T 1hus_A            1 PRRGPVAKRDVLPDPIYNSKLVTRLINKIXIDGKKSKAQKILYTAFDIIRERTGKDPXEVFEQALKNVXPVLEVRARRVG   80 (155)
T ss_dssp             --------CCCCCCTTTCCHHHHHHHHHHCCTTCHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHCCSEEEECCEET
T ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEECCCC
T ss_conf             99987876889999664888999999997565359999999999999999853775089999999967872135521548


Q ss_pred             CCCEECEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHHHCCCC
Q ss_conf             630000010485799999999999999857999989999999999973888726307889999999888532569
Q gi|254780265|r   82 GAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRLGGEIIDAANNRGVAVRKREETHKVAEANRAFSHYRW  156 (156)
Q Consensus        82 G~~yqvP~~i~~~r~~~lAirWii~~a~~r~~~~~~~~La~Eii~A~~~~g~aikkK~elhk~A~aNRa~ah~Rw  156 (156)
                      |.+||||+|+++.|++++||+||+++|+++++++|+++|+.||++|++|+|.|++||+|+||+|++||||+||||
T Consensus        81 g~~~~vP~~i~~~r~~~lAirWll~~~~~k~~k~~~~~La~Eii~A~~~~G~aikKK~elhk~A~aNRa~~h~Rw  155 (155)
T 1hus_A           81 GANYQVPVEVRPDRRVSLGLRWLVQYARLRNEKTXEERLANEIXDAANNTGAAVKKREDTHKXAEANKAFAHYRW  155 (155)
T ss_dssp             TEECCEEEECCHHHHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHHC--------
T ss_pred             CCCEEEEEEECHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             721313366078899999999999999875999869999999999994788401138999999999787750179


No 3  
>>3bbn_G Ribosomal protein S7; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} (G:)
Probab=100.00  E-value=0  Score=360.70  Aligned_cols=155  Identities=46%  Similarity=0.724  Sum_probs=154.6

Q ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEEE
Q ss_conf             98989997555799974378799999999976695999999999999866742488638999999984275404778752
Q gi|254780265|r    1 MSRRRRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALINVTPQFEVRTRRV   80 (156)
Q Consensus         1 m~Rr~~~~kr~~~pD~~y~~~lv~kliN~lMk~GKK~~A~kIv~~al~~I~~~~~~npi~il~~Ai~n~~P~~evk~~r~   80 (156)
                      |||++.+++++.++||+|+|++|++|+|++|++|||++|++|++++|++|+++|++||+++|++||+|++|.+||+++++
T Consensus         1 ms~~~~~kk~~~~~~~~~~~~li~k~in~lm~~GKK~~A~~i~~~al~~i~~~~~~nPi~il~~Ai~N~~P~~ev~~~k~   80 (155)
T 3bbn_G            1 MSRRGTVEEKTAKSDPIYRNRLVNMLVNRILKHGKKSLAYQILYRAVKKIQQKTETNPLSVLRQAIRGVTPDIAVKARRV   80 (155)
T ss_dssp             -CCSSCCCCCCCCCCTTTCCSSGGGHHHHSCCTTCHHHHHHHHSHHHHTTTTTCSSCTTHHHHHHGGGTCCSEEECCEEE
T ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEEEEE
T ss_conf             97999898788999988687999999999985232999999999999989874588728999999993599652343540


Q ss_pred             CCCCEECEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHHHCCC
Q ss_conf             463000001048579999999999999985799998999999999997388872630788999999988853256
Q gi|254780265|r   81 GGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRLGGEIIDAANNRGVAVRKREETHKVAEANRAFSHYR  155 (156)
Q Consensus        81 gG~~yqvP~~i~~~r~~~lAirWii~~a~~r~~~~~~~~La~Eii~A~~~~g~aikkK~elhk~A~aNRa~ah~R  155 (156)
                      ||.+||||+|+++.||+++|||||+++|++|++.+|+++||+||++|++|+|.|++||+|+||+|++||||+|||
T Consensus        81 gg~~~~vPv~i~~~rr~~lAirwil~~a~~k~~~~~~~~La~Eli~A~~~~g~aikkK~elhk~A~aNRa~~h~R  155 (155)
T 3bbn_G           81 GGSTHQVPIEIGSTQGKALAIRWLLGAARKRPGRNMAFKLSSELVDAAKGSGDAVRKKEETHRMAEANRAFAHFR  155 (155)
T ss_dssp             TTEEECCEEECCHHHHHHHHTTHHHHHHHTCCSSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSSSSGGGSCCC
T ss_pred             CCCCCEEEEEECHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHCCC
T ss_conf             870320015767899999999999999986689988999999999998388861232889999999987664369


No 4  
>>3gty_S TF, 30S ribosomal protein S7; chaperone-client complex, cell cycle, cell division, chaperone, isomerase, rotamase, ribonucleoprotein; 3.40A {Thermotoga maritima} (S:)
Probab=100.00  E-value=0  Score=350.47  Aligned_cols=148  Identities=54%  Similarity=0.954  Sum_probs=146.8

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCEECE
Q ss_conf             55579997437879999999997669599999999999986674248863899999998427540477875246300000
Q gi|254780265|r    9 VREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALINVTPQFEVRTRRVGGAAYSVP   88 (156)
Q Consensus         9 kr~~~pD~~y~~~lv~kliN~lMk~GKK~~A~kIv~~al~~I~~~~~~npi~il~~Ai~n~~P~~evk~~r~gG~~yqvP   88 (156)
                      |+..+|||+|+|++|++|||+||++|||++|++|++++|++|+..+++||+++|++||+|++|.+||+++++||.+||||
T Consensus         2 k~~~~~d~~~~~~lv~klin~lmk~GKK~~A~~i~~~al~~i~~~~~~npi~il~~ai~n~~P~~~v~~~k~gg~~~~vP   81 (149)
T 3gty_S            2 GRQIPPDPVFGDVLVAKLINRVMWDGKKTIAQKIVYGAFDIIREKTKKDPLEVFRQAVENVKPVLEVRPRRVGGATYQVP   81 (149)
T ss_dssp             CCCCCCCSSSCCHHHHHHHHHHCBTTBTTTHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHCCSEEEEEECSSSSCEEEE
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCEEEEEECCEEEEEC
T ss_conf             78589986658889999999998724399999999999999987356643799999998078831001144488857825


Q ss_pred             EECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHHHCCCC
Q ss_conf             10485799999999999999857999989999999999973888726307889999999888532569
Q gi|254780265|r   89 GEITSKRSQALAIRWLIMAARKRNETTMIDRLGGEIIDAANNRGVAVRKREETHKVAEANRAFSHYRW  156 (156)
Q Consensus        89 ~~i~~~r~~~lAirWii~~a~~r~~~~~~~~La~Eii~A~~~~g~aikkK~elhk~A~aNRa~ah~Rw  156 (156)
                      +|+++.||+++||+||++++++|++++|+++|++||++|++|+|.|++||+|+||+|++||||+||||
T Consensus        82 ~~i~~~rr~~lAikwll~~~~~r~~k~~~~~La~Eii~a~~~~g~aikkK~elhK~A~aNRa~~h~Rw  149 (149)
T 3gty_S           82 IEVQEPRRTSLALRWIVEAARAKKGRPMKEKLAEEIIAAYNNTGTAIKKKEDTHRMAEANRAFAHYRW  149 (149)
T ss_dssp             EECCTHHHHHHHHHHHHHHHHTCSSSCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHTTSGGGCTTCC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHCCCC
T ss_conf             86788899999999999999875999899999999999980888531239999999999774610379


No 5  
>>2noq_F L10A, 40S ribosomal protein S5; IRES RNA, ribosome, translation, internal initiation; 7.30A {Saccharomyces cerevisiae} PDB: 1s1h_G (F:)
Probab=100.00  E-value=0  Score=326.89  Aligned_cols=145  Identities=26%  Similarity=0.338  Sum_probs=140.6

Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEEECCCC
Q ss_conf             99975557999743787999999999766959999999999998667424886389999999842754047787524630
Q gi|254780265|r    5 RRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALINVTPQFEVRTRRVGGAA   84 (156)
Q Consensus         5 ~~~~kr~~~pD~~y~~~lv~kliN~lMk~GKK~~A~kIv~~al~~I~~~~~~npi~il~~Ai~n~~P~~evk~~r~gG~~   84 (156)
                      +++++|+.+|||+|+|++|++|||++|++|||++|++|+++||++|++.|++||+++|++||+||+|.+||+++++||.+
T Consensus         1 r~a~kr~~~~d~~~~~~li~klin~~m~~GKK~~A~ki~~~al~~i~~~~~~nPi~vl~~Ai~N~~P~~ev~~~r~gG~~   80 (150)
T 2noq_F            1 RYANKRFRKAQCPIIERLTNSLMMNGRNNGKKLKAVRIIKHTLDIINVLTDQNPIQVVVDAITNTGPREDTTRVGGGGAA   80 (150)
T ss_dssp             CCSCCCCCCCCSSSCCHHHHHHHHHHCCTTCHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHCCSEEEEEEECSSSE
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCEEEEEEEEECCEE
T ss_conf             97432367556868999999988745457649999999999999999736898607899999861353777998755623


Q ss_pred             EECEEECCHHHHHHHHHHHHHHHHHHCCC---CCHHHHHHHHHHHHHCCCCC--CEECHHHHHHHHHHHH
Q ss_conf             00001048579999999999999985799---99899999999999738887--2630788999999988
Q gi|254780265|r   85 YSVPGEITSKRSQALAIRWLIMAARKRNE---TTMIDRLGGEIIDAANNRGV--AVRKREETHKVAEANR  149 (156)
Q Consensus        85 yqvP~~i~~~r~~~lAirWii~~a~~r~~---~~~~~~La~Eii~A~~~~g~--aikkK~elhk~A~aNR  149 (156)
                      ||||+++++.|++++|||||+++|+++++   ++|+++||+||++|++|+|.  |++||+|+||||++||
T Consensus        81 ~qvPv~i~~~r~~~lAirWil~~ar~r~~~~~~~~~~~La~Eli~A~~~~G~s~aikKK~elhk~AeaNR  150 (150)
T 2noq_F           81 RRQAVDVSPLRRVNQAIALLTIGAREAAFRNIKTIAETLAEELINAAKGSSTSYAIKKKDELERVAKSNR  150 (150)
T ss_dssp             EEEEEECCHHHHHHHHHHHHHHHHHHCSCCCSSSSHHHHHHHHHHHSSTTCCSHHHHHHHHHHHHTTTTC
T ss_pred             EEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC
T ss_conf             4665776828989999999999999862489888899999999999837898403136889999998568


No 6  
>>2zkq_g 40S ribosomal protein S5E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} (g:)
Probab=100.00  E-value=0  Score=316.24  Aligned_cols=149  Identities=26%  Similarity=0.312  Sum_probs=144.5

Q ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEEE
Q ss_conf             98989997555799974378799999999976695999999999999866742488638999999984275404778752
Q gi|254780265|r    1 MSRRRRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALINVTPQFEVRTRRV   80 (156)
Q Consensus         1 m~Rr~~~~kr~~~pD~~y~~~lv~kliN~lMk~GKK~~A~kIv~~al~~I~~~~~~npi~il~~Ai~n~~P~~evk~~r~   80 (156)
                      |+|+..+.+++.++|+.|+|+||++|+|++|++|||++|++|++.||++|+..|++||++||++||+||+|.+||+++++
T Consensus        51 ~~~~~~~~k~~~~~~~~~~d~lv~klin~~m~~GKK~~A~~iv~~a~~~I~~~t~~nPi~vl~~AI~N~~P~~ev~~~~~  130 (204)
T 2zkq_g           51 HSAGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGR  130 (204)
T ss_dssp             ------------CCCHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHSCSCEEEEEEE
T ss_pred             CHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCEEEEEEEE
T ss_conf             42425553120122146999999999998874547889999999999999986189906889999980364304588753


Q ss_pred             CCCCEECEEECCHHHHHHHHHHHHHHHHHHCC---CCCHHHHHHHHHHHHHCCCCC--CEECHHHHHHHHHHHH
Q ss_conf             46300000104857999999999999998579---999899999999999738887--2630788999999988
Q gi|254780265|r   81 GGAAYSVPGEITSKRSQALAIRWLIMAARKRN---ETTMIDRLGGEIIDAANNRGV--AVRKREETHKVAEANR  149 (156)
Q Consensus        81 gG~~yqvP~~i~~~r~~~lAirWii~~a~~r~---~~~~~~~La~Eii~A~~~~g~--aikkK~elhk~A~aNR  149 (156)
                      ||.+||||++|++.||+++|||||+++|++++   .++|+++||+||++|++|+|.  |++||+|+||+|+|||
T Consensus       131 gG~~~~vPv~is~~rr~~lAirwil~~ar~~~~~~~k~~~~~La~Eii~A~~~~g~s~aikKKeelhk~AeaNR  204 (204)
T 2zkq_g          131 AGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR  204 (204)
T ss_dssp             TTEEEEEEEC-CHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHC-CTTCCC-CHHHHHHHHHHHHHHHCC
T ss_pred             CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHCC
T ss_conf             58326600423818999999999999998742579886999999999999808899621324788999998568


No 7  
>>1rss_A Ribosomal protein S7; RNA-binding, translation; 1.90A {Thermus thermophilus} (A:)
Probab=100.00  E-value=0  Score=307.44  Aligned_cols=150  Identities=47%  Similarity=0.844  Sum_probs=148.5

Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCEE
Q ss_conf             97555799974378799999999976695999999999999866742488638999999984275404778752463000
Q gi|254780265|r    7 AVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALINVTPQFEVRTRRVGGAAYS   86 (156)
Q Consensus         7 ~~kr~~~pD~~y~~~lv~kliN~lMk~GKK~~A~kIv~~al~~I~~~~~~npi~il~~Ai~n~~P~~evk~~r~gG~~yq   86 (156)
                      |+++...|||+|++++|++|+|.+|++|||++|++|++.+|++|+.+++.||+.+++.||.|++|.++++++++||.+||
T Consensus         2 a~k~~~~~~~~~~~~lv~k~~n~lm~~gkk~~a~~ii~~~~~~l~~~~k~nPi~i~~~av~n~~p~~~l~~~~~~g~~~~   81 (151)
T 1rss_A            2 AEVRQLQPDLVYGDVLVTAFINKIMRDGKKNLAARIFYDACKIIQEKTGQEPLKVFKQAVENVKPRMEVRSRRVGGANYQ   81 (151)
T ss_dssp             -----CCCCTTTCCHHHHHHHHHHCCTTCHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHCCSEEEEEEEETTEEEE
T ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHEEEEEEECCCCCC
T ss_conf             98676899977698899999999875345999999999999988860588622589999998532450344653872211


Q ss_pred             CEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHHHCCCC
Q ss_conf             0010485799999999999999857999989999999999973888726307889999999888532569
Q gi|254780265|r   87 VPGEITSKRSQALAIRWLIMAARKRNETTMIDRLGGEIIDAANNRGVAVRKREETHKVAEANRAFSHYRW  156 (156)
Q Consensus        87 vP~~i~~~r~~~lAirWii~~a~~r~~~~~~~~La~Eii~A~~~~g~aikkK~elhk~A~aNRa~ah~Rw  156 (156)
                      ||+++++.|+.++||+||+++++.|++++|+++|++||++|++++|.+++++||+|++|++||||+||||
T Consensus        82 vP~~l~~~r~~~lai~wli~~~~~r~~~~~~~~l~~ei~~a~~~~g~~i~~kdElHkla~anra~~~~r~  151 (151)
T 1rss_A           82 VPMEVSPRRQQSLALRWLVQAANQRPERRAAVRIAHELMDAAEGKGGAVKKKEDVERMAEANRAYAHYRW  151 (151)
T ss_dssp             EEEECCHHHHHHHHHHHHHHHHTTSSCSSHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHCC-----CSCC
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHCCCC
T ss_conf             3625694899999999999999875887399999999999972888631219999999999775601489


No 8  
>>1iqv_A Ribosomal protein S7; RNA-binding, decoding center, helix-turn- helix, ribosome; 2.10A {Pyrococcus horikoshii} (A:)
Probab=100.00  E-value=0  Score=303.51  Aligned_cols=143  Identities=24%  Similarity=0.295  Sum_probs=135.1

Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCEE
Q ss_conf             97555799974378799999999976695999999999999866742488638999999984275404778752463000
Q gi|254780265|r    7 AVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALINVTPQFEVRTRRVGGAAYS   86 (156)
Q Consensus         7 ~~kr~~~pD~~y~~~lv~kliN~lMk~GKK~~A~kIv~~al~~I~~~~~~npi~il~~Ai~n~~P~~evk~~r~gG~~yq   86 (156)
                      +.+....+||.|+|++|++|+|++|++|||++|++|++.+|++|+.+|++||+++|++||+|++|.+|++++++||.+||
T Consensus        71 ~~~~~~~~~~~~~~~lv~~~~n~lm~~GKK~~A~kiv~~a~~~i~~~t~~nPi~vl~~Ai~N~~P~~ev~~~~~GG~~~~  150 (218)
T 1iqv_A           71 INKVMRSGGSHYKVAGHFMRREHRSLNSKKVRAYEVVKEAFKIIEKRTGKNPIQVLVWAIENAAPREDTTSVMFGGIRYH  150 (218)
T ss_dssp             HHHHHTTCCC-----------------CHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHSCSCEEEEEEETTEEEE
T ss_pred             HHHHHHCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHEEEEECCCEEEE
T ss_conf             98874345543333441000002457773999999999999999984589869999999996798112057533987887


Q ss_pred             CEEECCHHHHHHHHHHHHHHHHHHCC---CCCHHHHHHHHHHHHHCCC--CCCEECHHHHHHHHHHHH
Q ss_conf             00104857999999999999998579---9998999999999997388--872630788999999988
Q gi|254780265|r   87 VPGEITSKRSQALAIRWLIMAARKRN---ETTMIDRLGGEIIDAANNR--GVAVRKREETHKVAEANR  149 (156)
Q Consensus        87 vP~~i~~~r~~~lAirWii~~a~~r~---~~~~~~~La~Eii~A~~~~--g~aikkK~elhk~A~aNR  149 (156)
                      ||+|+++.||+++||+||+++|++++   .++|+++||+||++|++|+  |.|++||+|+||+|++||
T Consensus       151 vPv~is~~rr~~lAirwIl~~a~~r~~~~~~~~~~~LA~Eii~Aa~~~gks~aikKK~elhk~A~aNR  218 (218)
T 1iqv_A          151 VAVDISPLRRLDVALRNIALGASAKCYRTKMSFAEALAEEIILAANKDPKSYAYSKKLEIERIAESSR  218 (218)
T ss_dssp             EEECCCHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHCC
T ss_pred             ECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHCC
T ss_conf             27242688999999999999999864678888999999999999758888646652688999898568


No 9  
>>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4- 5/6-kinase, inositol phosphate, inositolphosphate, polyphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X (A:1-111)
Probab=34.88  E-value=32  Score=15.46  Aligned_cols=65  Identities=18%  Similarity=0.236  Sum_probs=50.9

Q ss_pred             CEECEEECCHHHHHHHHHHHHHHHHHHCC--------CCCH---------HHHHHHHHHHHHCCCCCCEECHHHHHHHHH
Q ss_conf             00000104857999999999999998579--------9998---------999999999997388872630788999999
Q gi|254780265|r   84 AYSVPGEITSKRSQALAIRWLIMAARKRN--------ETTM---------IDRLGGEIIDAANNRGVAVRKREETHKVAE  146 (156)
Q Consensus        84 ~yqvP~~i~~~r~~~lAirWii~~a~~r~--------~~~~---------~~~La~Eii~A~~~~g~aikkK~elhk~A~  146 (156)
                      .+-|-+.+++++..++-.--+++.|++++        .+++         -.+|.+||+.|..|...+-.-..++....+
T Consensus        18 ~~~VGY~l~~kK~~~f~~~~l~~~~~~~Gi~lV~ID~~~pL~~QGPfDvIlHKltD~i~~~~~~d~~~~~~~~~l~~Y~~   97 (111)
T 2q7d_A           18 GKRVGYWLSEKKIKKLNFQAFAELCRKRGMEVVQLNLSRPIEEQGPLDVIIHKLTDVILEADQNDSQSLELVHRFQEYID   97 (111)
T ss_dssp             TCEEEEECCHHHHHHHTHHHHHHHHHTTTCEEEECCTTSCSGGGCCCSEEEECCHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHCCCCEEEEECCHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf             67699998802554523999999999789979996499995674984599976547765303576421489999999886


Q ss_pred             HH
Q ss_conf             98
Q gi|254780265|r  147 AN  148 (156)
Q Consensus       147 aN  148 (156)
                      ++
T Consensus        98 ~H   99 (111)
T 2q7d_A           98 AH   99 (111)
T ss_dssp             HC
T ss_pred             HC
T ss_conf             48


No 10 
>>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} (A:78-163)
Probab=17.57  E-value=68  Score=13.48  Aligned_cols=32  Identities=3%  Similarity=-0.031  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHCCCCEEEEEEEECCCCEECEEE
Q ss_conf             89999999842754047787524630000010
Q gi|254780265|r   59 VALFRQALINVTPQFEVRTRRVGGAAYSVPGE   90 (156)
Q Consensus        59 i~il~~Ai~n~~P~~evk~~r~gG~~yqvP~~   90 (156)
                      -.=+.+||...+|+=...-..+||..|-..+|
T Consensus        54 ~dDi~rAi~~L~~LGGf~vi~iggk~~v~SVP   85 (86)
T 1u5t_A           54 LDDLEKSIDMLKSLECFEIFQIRGKKFLRSVP   85 (86)
T ss_dssp             HHHHHHHHHHHTTTCCCCEEEETTEEEECCSS
T ss_pred             HHHHHHHHHHHHHCCCCEEEEECCEEEEEECC
T ss_conf             99999999998734286699989999998178


Done!