HHsearch results for GI: 254780265 and protein with PDBid: 2noq_F
>2noq_F L10A, 40S ribosomal protein S5; IRES RNA, ribosome, translation, internal initiation; 7.30A {Saccharomyces cerevisiae} PDB: 1s1h_G
Probab=100.00 E-value=0 Score=303.12 Aligned_cols=140 Identities=29% Similarity=0.421 Sum_probs=131.0
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHH----HCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEEEC
Q ss_conf 99755579997437879999999997----66959999999999998667424886389999999842754047787524
Q gi|254780265|r 6 RAVVREVLPDPKFSDFVVAKFMNAIM----YGGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALINVTPQFEVRTRRVG 81 (156)
Q Consensus 6 ~~~kr~~~pD~~y~~~lv~kliN~lM----k~GKK~~A~kIv~~al~~I~~~~~~npi~il~~Ai~n~~P~~evk~~r~g 81 (156)
.+.+++ +++++|+|++|||+|| ++|||++|++|||+||++|+++|++||++||++||+|++|.+||+++++|
T Consensus 2 ~a~~~f----~k~~~~iv~r~iN~lM~~g~k~GKK~~A~kiv~~al~~i~~~t~~nP~~vl~~Ai~N~~P~~ev~~~r~G 77 (150)
T 2noq_F 2 YANKRF----RKAQCPIIERLTNSLMMNGRNNGKKLKAVRIIKHTLDIINVLTDQNPIQVVVDAITNTGPREDTTRVGGG 77 (150)
T ss_dssp CSCCCC----CCCCSSSCCHHHHHHHHHHCCTTCHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHCCSEEEEEEECS
T ss_pred CCCCCC----CCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 530125----7545869999999977625468749999999999999999846998899999999947996588873038
Q ss_pred CCCEECEEECCHHHHHHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHHHCCCCC--CEECHHHHHHHHHHHH
Q ss_conf 63000001048579999999999999985---79999899999999999738887--2630788999999988
Q gi|254780265|r 82 GAAYSVPGEITSKRSQALAIRWLIMAARK---RNETTMIDRLGGEIIDAANNRGV--AVRKREETHKVAEANR 149 (156)
Q Consensus 82 G~~yqvP~~i~~~r~~~lAirWii~~a~~---r~~~~~~~~La~Eii~A~~~~g~--aikkK~elhk~A~aNR 149 (156)
|++||||+||++.|+++||||||+++|++ +++++|+++||+||++|++|+|. ||+||+|+||||+|||
T Consensus 78 G~~yqvPv~v~~~rr~~lAirwi~~~a~~~~~r~~~~~~~~La~Eii~A~~~~g~s~AvkKK~e~hk~A~aNR 150 (150)
T 2noq_F 78 GAARRQAVDVSPLRRVNQAIALLTIGAREAAFRNIKTIAETLAEELINAAKGSSTSYAIKKKDELERVAKSNR 150 (150)
T ss_dssp SSEEEEEEECCHHHHHHHHHHHHHHHHHHCSCCCSSSSHHHHHHHHHHHSSTTCCSHHHHHHHHHHHHTTTTC
T ss_pred CEEEEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 7567742220816889999999999999863369998999999999999818898523126889999998568