Query gi|254780265|ref|YP_003064678.1| 30S ribosomal protein S7 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 156 No_of_seqs 109 out of 1439 Neff 6.0 Searched_HMMs 23785 Date Tue May 24 09:09:19 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780265.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3i1m_G 30S ribosomal protein S 100.0 0 0 391.9 13.7 156 1-156 1-156 (179) 2 1hus_A Ribosomal protein S7; R 100.0 0 0 385.9 14.9 155 2-156 1-155 (155) 3 1rss_A Ribosomal protein S7; R 100.0 0 0 372.4 14.5 150 7-156 2-151 (151) 4 3bbn_G Ribosomal protein S7; s 100.0 0 0 379.0 7.7 155 1-155 1-155 (155) 5 3gty_S TF, 30S ribosomal prote 100.0 0 0 366.4 13.8 148 9-156 2-149 (149) 6 3ofp_G 30S ribosomal protein S 100.0 0 0 358.2 -12.7 150 3-152 1-150 (150) 7 2noq_F L10A, 40S ribosomal pro 100.0 0 0 303.1 12.1 140 6-149 2-150 (150) 8 2zkq_g 40S ribosomal protein S 100.0 1.4E-45 0 293.4 12.6 135 15-149 61-204 (204) 9 1iqv_A Ribosomal protein S7; R 100.0 4.2E-45 0 290.8 14.3 131 19-149 63-218 (218) 10 1yxb_A PRA-PH, phosphoribosyl- 14.0 60 0.0025 12.9 2.6 39 28-66 28-66 (98) No 1 >3i1m_G 30S ribosomal protein S7; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_G* 3e1a_U 3e1c_U 1vs5_G 3i1o_G 3i1q_G 3i1s_G 3i1z_G 3i21_G 3kc4_G 2qal_G* 1p6g_G 1p87_G 2aw7_G 2avy_G 2i2u_G 2i2p_G* 2qan_G* 2qb9_G* 2qbb_G* ... Probab=100.00 E-value=0 Score=391.86 Aligned_cols=156 Identities=51% Similarity=0.855 Sum_probs=155.4 Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEEE Q ss_conf 98989997555799974378799999999976695999999999999866742488638999999984275404778752 Q gi|254780265|r 1 MSRRRRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALINVTPQFEVRTRRV 80 (156) Q Consensus 1 m~Rr~~~~kr~~~pD~~y~~~lv~kliN~lMk~GKK~~A~kIv~~al~~I~~~~~~npi~il~~Ai~n~~P~~evk~~r~ 80 (156) ||||+.++||.++|||+|+|++|++|||+||++|||++|++|++++|++|+++|++||+++|++||+|++|.+||+++++ T Consensus 1 m~R~~~~~kr~~~pD~~y~~~lV~kliN~lMk~GKK~~A~kIv~~a~~~I~~~t~~npi~vl~~AI~N~~P~~evk~~r~ 80 (179) T 3i1m_G 1 MPRRRVIGQRKILPDPKFGSELLAKFVNILMVDGKKSTAESIVYSALETLAQRSGKSELEAFEVALENVRPTVEVKSRRV 80 (179) T ss_dssp -CCSCCCCCCCCCCCTTTCCHHHHHHHHHHCCTTCHHHHHHHHHHHHHHHHHHHCSCSHHHHHHHHHHHCCSEEEECCCC T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEEEEEE T ss_conf 96999998787999977587899999999876645999999999999888874367425899999993799627887750 Q ss_pred CCCCEECEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHHHCCCC Q ss_conf 4630000010485799999999999999857999989999999999973888726307889999999888532569 Q gi|254780265|r 81 GGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRLGGEIIDAANNRGVAVRKREETHKVAEANRAFSHYRW 156 (156) Q Consensus 81 gG~~yqvP~~i~~~r~~~lAirWii~~a~~r~~~~~~~~La~Eii~A~~~~g~aikkK~elhk~A~aNRa~ah~Rw 156 (156) ||++||||+||++.|+++||||||+++|+++++++|+++||+||++|++|+|.|++||+|+||+|++||||||||| T Consensus 81 GG~~~qvPv~i~~~rr~~lAirWil~aar~r~~k~~~~~La~EIi~A~~~~g~aikKK~elhK~A~aNRa~ahyRW 156 (179) T 3i1m_G 81 GGSTYQVPVEVRPVRRNALAMRWIVEAARKRGDKSMALRLANELSDAAENKGTAVKKREDVHRMAEANKAFAHYRW 156 (179) T ss_dssp SSSCCCEEEECCTTHHHHHHHHHHHHHHTTCCSSSHHHHHHHHHHHHHTSCSHHHHHHHHHHHHTTTGGGGC---- T ss_pred CCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHH T ss_conf 7722222022282889999999999999865999899999999999995899766519999999999899998998 No 2 >1hus_A Ribosomal protein S7; RNA-binding protein, decoding center,; 2.50A {Geobacillus stearothermophilus} SCOP: a.75.1.1 Probab=100.00 E-value=0 Score=385.87 Aligned_cols=155 Identities=55% Similarity=0.910 Sum_probs=154.0 Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEEEC Q ss_conf 89899975557999743787999999999766959999999999998667424886389999999842754047787524 Q gi|254780265|r 2 SRRRRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALINVTPQFEVRTRRVG 81 (156) Q Consensus 2 ~Rr~~~~kr~~~pD~~y~~~lv~kliN~lMk~GKK~~A~kIv~~al~~I~~~~~~npi~il~~Ai~n~~P~~evk~~r~g 81 (156) |||++++||.++|||+|+|++|++|||+||++|||++|++|++++|++|+++|++||+++|++||+|++|.+||+++++| T Consensus 1 pr~~~~~kr~~~pd~~y~~~lv~k~in~lM~~GKK~~A~kIv~~al~~i~~~~~~~pi~il~~Ai~n~~P~~ev~~~r~g 80 (155) T 1hus_A 1 PRRGPVAKRDVLPDPIYNSKLVTRLINKIMIDGKKSKAQKILYTAFDIIRERTGKDPMEVFEQALKNVMPVLEVRARRVG 80 (155) T ss_dssp --------CCCCCCTTTCCHHHHHHHHHHCCTTCHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHCCSEEEECCEET T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEEEEC T ss_conf 99998887889999665879999999999862219999999999999999873998689999999935885114656408 Q ss_pred CCCEECEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHHHCCCC Q ss_conf 630000010485799999999999999857999989999999999973888726307889999999888532569 Q gi|254780265|r 82 GAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRLGGEIIDAANNRGVAVRKREETHKVAEANRAFSHYRW 156 (156) Q Consensus 82 G~~yqvP~~i~~~r~~~lAirWii~~a~~r~~~~~~~~La~Eii~A~~~~g~aikkK~elhk~A~aNRa~ah~Rw 156 (156) |++||||+++++.|+++||||||+++|+++++++|+++||+||+||++|+|.|++||+|+||+|++||||+|||| T Consensus 81 G~~yqvPv~v~~~rr~~lAirWil~~a~~r~~~~~~~~La~Eii~A~~~~g~avkKK~e~hk~A~aNRa~ahyRw 155 (155) T 1hus_A 81 GANYQVPVEVRPDRRVSLGLRWLVQYARLRNEKTMEERLANEIMDAANNTGAAVKKREDTHKMAEANKAFAHYRW 155 (155) T ss_dssp TEECCEEEECCHHHHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHHC-------- T ss_pred CEEEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHCCCCC T ss_conf 764787575186899999999999999846889899999999999994899766518999999998662502589 No 3 >1rss_A Ribosomal protein S7; RNA-binding, translation; 1.90A {Thermus thermophilus} SCOP: a.75.1.1 PDB: 1n32_G* 1i95_G* 1i96_G* 1i97_G* 1i94_G 1j5e_G* 1n33_G* 1n34_G 1n36_G 1pns_G 1pnx_G 1voq_G 1vos_G 1vov_G 1vox_G 1voz_G 2e5l_G 2zm6_G 3fic_G* 2vqe_G* ... Probab=100.00 E-value=0 Score=372.36 Aligned_cols=150 Identities=47% Similarity=0.844 Sum_probs=148.9 Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCEE Q ss_conf 97555799974378799999999976695999999999999866742488638999999984275404778752463000 Q gi|254780265|r 7 AVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALINVTPQFEVRTRRVGGAAYS 86 (156) Q Consensus 7 ~~kr~~~pD~~y~~~lv~kliN~lMk~GKK~~A~kIv~~al~~I~~~~~~npi~il~~Ai~n~~P~~evk~~r~gG~~yq 86 (156) |++|.++|||+|+|++|++|||+||++|||++|++|++++|++|++++++||+++|++||+|++|.+||+++++||++|| T Consensus 2 a~~r~~~pd~~y~~~lv~k~iN~lMk~GKK~~A~kI~~~al~~i~~~~~~npi~vl~~Ai~n~~P~~ev~~~r~gG~~~~ 81 (151) T 1rss_A 2 AEVRQLQPDLVYGDVLVTAFINKIMRDGKKNLAARIFYDACKIIQEKTGQEPLKVFKQAVENVKPRMEVRSRRVGGANYQ 81 (151) T ss_dssp -----CCCCTTTCCHHHHHHHHHHCCTTCHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHCCSEEEEEEEETTEEEE T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCEEEEEECCEEEE T ss_conf 98676899976588999999999874347999999999999998870589749999999996599402243555888577 Q ss_pred CEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHHHCCCC Q ss_conf 0010485799999999999999857999989999999999973888726307889999999888532569 Q gi|254780265|r 87 VPGEITSKRSQALAIRWLIMAARKRNETTMIDRLGGEIIDAANNRGVAVRKREETHKVAEANRAFSHYRW 156 (156) Q Consensus 87 vP~~i~~~r~~~lAirWii~~a~~r~~~~~~~~La~Eii~A~~~~g~aikkK~elhk~A~aNRa~ah~Rw 156 (156) ||+++++.||++||||||+++|++|++++|+++||+||++|++|+|.|++||+|+||+|++||||+|||| T Consensus 82 vP~~is~~rr~~lAirWil~aa~kr~~~~~~~~La~Eii~a~~~~g~aikKk~e~hk~A~aNRa~~hyRw 151 (151) T 1rss_A 82 VPMEVSPRRQQSLALRWLVQAANQRPERRAAVRIAHELMDAAEGKGGAVKKKEDVERMAEANRAYAHYRW 151 (151) T ss_dssp EEEECCHHHHHHHHHHHHHHHHTTSSCSSHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHCC-----CSCC T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHCCCCC T ss_conf 1466787899999999999999866999899999999999980888642219999999999661503689 No 4 >3bbn_G Ribosomal protein S7; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Probab=100.00 E-value=0 Score=378.97 Aligned_cols=155 Identities=46% Similarity=0.724 Sum_probs=154.3 Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEEE Q ss_conf 98989997555799974378799999999976695999999999999866742488638999999984275404778752 Q gi|254780265|r 1 MSRRRRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALINVTPQFEVRTRRV 80 (156) Q Consensus 1 m~Rr~~~~kr~~~pD~~y~~~lv~kliN~lMk~GKK~~A~kIv~~al~~I~~~~~~npi~il~~Ai~n~~P~~evk~~r~ 80 (156) ||||+++++|.++|||+|+|++|++|||++|++|||++|++||+++|++|+++|++||+++|++||+|++|.+||+++|+ T Consensus 1 m~rr~~~~kr~~~~Dp~~~~~lv~klin~lmk~GKK~~A~kiv~~a~~~I~~~~~~~pl~vl~~Ai~N~~P~~ev~~~r~ 80 (155) T 3bbn_G 1 MSRRGTVEEKTAKSDPIYRNRLVNMLVNRILKHGKKSLAYQILYRAVKKIQQKTETNPLSVLRQAIRGVTPDIAVKARRV 80 (155) T ss_dssp -CCSSCCCCCCCCCCTTTCCSSGGGHHHHSCCTTCHHHHHHHHSHHHHTTTTTCSSCTTHHHHHHGGGTCCSEEECCEEE T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCEEEEEEE T ss_conf 96999998788999987574999999987642876999999999999999985588858999999980799625665641 Q ss_pred CCCCEECEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHHHCCC Q ss_conf 463000001048579999999999999985799998999999999997388872630788999999988853256 Q gi|254780265|r 81 GGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRLGGEIIDAANNRGVAVRKREETHKVAEANRAFSHYR 155 (156) Q Consensus 81 gG~~yqvP~~i~~~r~~~lAirWii~~a~~r~~~~~~~~La~Eii~A~~~~g~aikkK~elhk~A~aNRa~ah~R 155 (156) ||++||||+++++.|++++|||||+++|+++++++|+++||+||++|++|+|.|++||+|+||+|++|||||||| T Consensus 81 GG~~~~vPv~i~~~r~~~lAirWil~~a~kr~~k~~~~~La~Eii~A~~~~g~aikKk~e~hk~A~aNRa~ah~R 155 (155) T 3bbn_G 81 GGSTHQVPIEIGSTQGKALAIRWLLGAARKRPGRNMAFKLSSELVDAAKGSGDAVRKKEETHRMAEANRAFAHFR 155 (155) T ss_dssp TTEEECCEEECCHHHHHHHHTTHHHHHHHTCCSSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSSSSGGGSCCC T ss_pred CCEEEEEEEEECHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHCCC T ss_conf 887478611317999999999999999987699999999999999998089974450899999999977464369 No 5 >3gty_S TF, 30S ribosomal protein S7; chaperone-client complex, cell cycle, cell division, chaperone, isomerase, rotamase, ribonucleoprotein; 3.40A {Thermotoga maritima} Probab=100.00 E-value=0 Score=366.40 Aligned_cols=148 Identities=54% Similarity=0.954 Sum_probs=146.8 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCEECE Q ss_conf 55579997437879999999997669599999999999986674248863899999998427540477875246300000 Q gi|254780265|r 9 VREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALINVTPQFEVRTRRVGGAAYSVP 88 (156) Q Consensus 9 kr~~~pD~~y~~~lv~kliN~lMk~GKK~~A~kIv~~al~~I~~~~~~npi~il~~Ai~n~~P~~evk~~r~gG~~yqvP 88 (156) +|.+.|||+|+|++|++|||+||++|||++|++|++++|++|++.+++||+++|++||+|++|.+||+++++||++|||| T Consensus 2 ~r~~~pd~~~~~~lv~k~in~lMk~GKK~kA~kiv~~al~~i~~~~~~~pi~il~~Ai~n~~P~~ev~~~r~GG~~~~vP 81 (149) T 3gty_S 2 GRQIPPDPVFGDVLVAKLINRVMWDGKKTIAQKIVYGAFDIIREKTKKDPLEVFRQAVENVKPVLEVRPRRVGGATYQVP 81 (149) T ss_dssp CCCCCCCSSSCCHHHHHHHHHHCBTTBTTTHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHCCSEEEEEECSSSSCEEEE T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHCCCEEECCEEEEEC T ss_conf 89789986658789999999998724499999999999999987457854699999999767820110342088868824 Q ss_pred EECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHHHCCCC Q ss_conf 10485799999999999999857999989999999999973888726307889999999888532569 Q gi|254780265|r 89 GEITSKRSQALAIRWLIMAARKRNETTMIDRLGGEIIDAANNRGVAVRKREETHKVAEANRAFSHYRW 156 (156) Q Consensus 89 ~~i~~~r~~~lAirWii~~a~~r~~~~~~~~La~Eii~A~~~~g~aikkK~elhk~A~aNRa~ah~Rw 156 (156) +++++.||++||||||+++|+++++++|+++||+||++|++|+|.|++||+|+||+|++||||+|||| T Consensus 82 v~i~~~rr~~lAirWil~~a~~k~~~~~~~~La~Eii~a~~~~g~avkkk~e~hK~A~anRa~~h~Rw 149 (149) T 3gty_S 82 IEVQEPRRTSLALRWIVEAARAKKGRPMKEKLAEEIIAAYNNTGTAIKKKEDTHRMAEANRAFAHYRW 149 (149) T ss_dssp EECCTHHHHHHHHHHHHHHHHTCSSSCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHTTSGGGCTTCC T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHCCCCC T ss_conf 76787899999999999999875999899999999999980888631229999999999661502589 No 6 >3ofp_G 30S ribosomal protein S7; protein biosynthesis, ribosomes, RNA, tRNA, transfer, eryThr ketolide, macrolide, antibiotic, EXIT, peptidyl; 3.10A {Escherichia coli} PDB: 3fih_G* 2wwl_G 3ofo_G 2gy9_G 2gyb_G Probab=100.00 E-value=0 Score=358.16 Aligned_cols=150 Identities=50% Similarity=0.806 Sum_probs=148.6 Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEEECC Q ss_conf 98999755579997437879999999997669599999999999986674248863899999998427540477875246 Q gi|254780265|r 3 RRRRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALINVTPQFEVRTRRVGG 82 (156) Q Consensus 3 Rr~~~~kr~~~pD~~y~~~lv~kliN~lMk~GKK~~A~kIv~~al~~I~~~~~~npi~il~~Ai~n~~P~~evk~~r~gG 82 (156) ||+++++|.++|||+|+|++|++|||+||++|||++|++|++++|++|+++|++||+++|++||+|++|.+||+++++|| T Consensus 1 R~~~~~kr~~~pD~~y~~~lv~kfin~lM~~GKK~~A~~iv~~al~~i~~~~~~~pi~vl~~Ai~n~~P~~ev~~~r~GG 80 (150) T 3ofp_G 1 RRRVIGQRKILPDPKFGSELLAKFVNILMVDGKKSTAESIVYSALETLAQRSGKSELEAFEVALENVRPTVEVKSRRVGG 80 (150) T ss_dssp CCSCCCCCCCCCCSSSCCHHHHTHHHHHCCTTCTTSTTTSSSSSSTTSSSSSCCCTTTSSTTTTTSSCCCSBCCCCCSSS T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEEEEEECC T ss_conf 99988889899997768899999999988654299999999999999988537853378999998089851577642077 Q ss_pred CCEECEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHHH Q ss_conf 3000001048579999999999999985799998999999999997388872630788999999988853 Q gi|254780265|r 83 AAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRLGGEIIDAANNRGVAVRKREETHKVAEANRAFS 152 (156) Q Consensus 83 ~~yqvP~~i~~~r~~~lAirWii~~a~~r~~~~~~~~La~Eii~A~~~~g~aikkK~elhk~A~aNRa~a 152 (156) ++||||+|+++.|++++|||||+++|++|++++|+++|++||++|++|+|.|++||+|+||+|++||||| T Consensus 81 ~~y~vP~~i~~~r~~~lAirWil~~a~~r~~k~~~~~La~Eii~A~~~~g~aikKk~elhK~A~aNRa~a 150 (150) T 3ofp_G 81 STYQVPVEVRPVRRNALAMRWIVEAARKRGDKSMALRLANELSDAAENKGTAVKKREDVHRMAEANKAFA 150 (150) T ss_dssp CCCCCCBCCCHHHHHHTHHHHTTTTTSSSSCSSHHHHTTTTGGGTTSCCSSSSHHHHTTTCCCCCCCCCC T ss_pred CCCEEEEEECHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHCCC T ss_conf 1223423417678999999999999986699989999999999998289976650999999999887729 No 7 >2noq_F L10A, 40S ribosomal protein S5; IRES RNA, ribosome, translation, internal initiation; 7.30A {Saccharomyces cerevisiae} PDB: 1s1h_G Probab=100.00 E-value=0 Score=303.12 Aligned_cols=140 Identities=29% Similarity=0.421 Sum_probs=131.0 Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHH----HCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEEEC Q ss_conf 99755579997437879999999997----66959999999999998667424886389999999842754047787524 Q gi|254780265|r 6 RAVVREVLPDPKFSDFVVAKFMNAIM----YGGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALINVTPQFEVRTRRVG 81 (156) Q Consensus 6 ~~~kr~~~pD~~y~~~lv~kliN~lM----k~GKK~~A~kIv~~al~~I~~~~~~npi~il~~Ai~n~~P~~evk~~r~g 81 (156) .+.+++ +++++|+|++|||+|| ++|||++|++|||+||++|+++|++||++||++||+|++|.+||+++++| T Consensus 2 ~a~~~f----~k~~~~iv~r~iN~lM~~g~k~GKK~~A~kiv~~al~~i~~~t~~nP~~vl~~Ai~N~~P~~ev~~~r~G 77 (150) T 2noq_F 2 YANKRF----RKAQCPIIERLTNSLMMNGRNNGKKLKAVRIIKHTLDIINVLTDQNPIQVVVDAITNTGPREDTTRVGGG 77 (150) T ss_dssp CSCCCC----CCCCSSSCCHHHHHHHHHHCCTTCHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHCCSEEEEEEECS T ss_pred CCCCCC----CCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEECCC T ss_conf 530125----7545869999999977625468749999999999999999846998899999999947996588873038 Q ss_pred CCCEECEEECCHHHHHHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHHHCCCCC--CEECHHHHHHHHHHHH Q ss_conf 63000001048579999999999999985---79999899999999999738887--2630788999999988 Q gi|254780265|r 82 GAAYSVPGEITSKRSQALAIRWLIMAARK---RNETTMIDRLGGEIIDAANNRGV--AVRKREETHKVAEANR 149 (156) Q Consensus 82 G~~yqvP~~i~~~r~~~lAirWii~~a~~---r~~~~~~~~La~Eii~A~~~~g~--aikkK~elhk~A~aNR 149 (156) |++||||+||++.|+++||||||+++|++ +++++|+++||+||++|++|+|. ||+||+|+||||+||| T Consensus 78 G~~yqvPv~v~~~rr~~lAirwi~~~a~~~~~r~~~~~~~~La~Eii~A~~~~g~s~AvkKK~e~hk~A~aNR 150 (150) T 2noq_F 78 GAARRQAVDVSPLRRVNQAIALLTIGAREAAFRNIKTIAETLAEELINAAKGSSTSYAIKKKDELERVAKSNR 150 (150) T ss_dssp SSEEEEEEECCHHHHHHHHHHHHHHHHHHCSCCCSSSSHHHHHHHHHHHSSTTCCSHHHHHHHHHHHHTTTTC T ss_pred CEEEEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC T ss_conf 7567742220816889999999999999863369998999999999999818898523126889999998568 No 8 >2zkq_g 40S ribosomal protein S5E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 3jyv_G* Probab=100.00 E-value=1.4e-45 Score=293.42 Aligned_cols=135 Identities=29% Similarity=0.409 Sum_probs=129.7 Q ss_pred CCCCCCHHHHHHHHHHHH----CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCEECEEE Q ss_conf 974378799999999976----6959999999999998667424886389999999842754047787524630000010 Q gi|254780265|r 15 DPKFSDFVVAKFMNAIMY----GGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALINVTPQFEVRTRRVGGAAYSVPGE 90 (156) Q Consensus 15 D~~y~~~lv~kliN~lMk----~GKK~~A~kIv~~al~~I~~~~~~npi~il~~Ai~n~~P~~evk~~r~gG~~yqvP~~ 90 (156) ..+.+.++|++|||.||. +|||++|++||++||++|+++|++||++||++||+|++|.+|++++++||.+||||++ T Consensus 61 f~K~~~~iverliN~LM~~g~k~GKK~~A~kIv~~Af~iI~~~T~~nPi~Vl~~AI~N~~P~~ev~rir~GG~~y~vPV~ 140 (204) T 2zkq_g 61 FRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVD 140 (204) T ss_dssp --CCCHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHSCSCEEEEEEETTEEEEEEEC T ss_pred CCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEECCCEEEEEEEE T ss_conf 26556859999999999977607488999999999999999736898899999999827996478997418746872023 Q ss_pred CCHHHHHHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHHHCCCCC--CEECHHHHHHHHHHHH Q ss_conf 48579999999999999985---79999899999999999738887--2630788999999988 Q gi|254780265|r 91 ITSKRSQALAIRWLIMAARK---RNETTMIDRLGGEIIDAANNRGV--AVRKREETHKVAEANR 149 (156) Q Consensus 91 i~~~r~~~lAirWii~~a~~---r~~~~~~~~La~Eii~A~~~~g~--aikkK~elhk~A~aNR 149 (156) ++|.||+++|||||+++|++ |++++|+++||+||++|++|+|. ||+||+|+||+|+||| T Consensus 141 vsp~Rr~~lAlrwi~~~ar~~~~r~~ks~~e~LA~Eii~Aa~~~g~s~AikKKeEihr~A~aNR 204 (204) T 2zkq_g 141 VSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 204 (204) T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHC-CTTCCC-CHHHHHHHHHHHHHHHCC T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHCC T ss_conf 1788999999999999998642578887999999999999818899631213889999998568 No 9 >1iqv_A Ribosomal protein S7; RNA-binding, decoding center, helix-turn- helix, ribosome; 2.10A {Pyrococcus horikoshii} SCOP: a.75.1.1 Probab=100.00 E-value=4.2e-45 Score=290.80 Aligned_cols=131 Identities=30% Similarity=0.471 Sum_probs=126.1 Q ss_pred CCHHHHHHHHHHHHC--------------------CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEE Q ss_conf 787999999999766--------------------959999999999998667424886389999999842754047787 Q gi|254780265|r 19 SDFVVAKFMNAIMYG--------------------GKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALINVTPQFEVRTR 78 (156) Q Consensus 19 ~~~lv~kliN~lMk~--------------------GKK~~A~kIv~~al~~I~~~~~~npi~il~~Ai~n~~P~~evk~~ 78 (156) +.++|++|||.||++ |||++|++||++||++|+.+|++||++||++||+|++|.+||+++ T Consensus 63 ~~~IVERliN~lM~~G~n~~~~~~~~~~~~~~~~~GKK~~A~kIv~~A~~iI~~kT~~nPi~Vl~~AI~N~~P~~ev~si 142 (218) T 1iqv_A 63 NVHIVERLINKVMRSGGSHYKVAGHFMRREHRSLNSKKVRAYEVVKEAFKIIEKRTGKNPIQVLVWAIENAAPREDTTSV 142 (218) T ss_dssp -CBHHHHHHHHHHTTCCC-----------------CHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHSCSCEEEEE T ss_pred CCCHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEE T ss_conf 58699999988642455422223310000014577729999999999999999855998799999999967983003777 Q ss_pred EECCCCEECEEECCHHHHHHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHHHCC--CCCCEECHHHHHHHHHHHH Q ss_conf 52463000001048579999999999999985---79999899999999999738--8872630788999999988 Q gi|254780265|r 79 RVGGAAYSVPGEITSKRSQALAIRWLIMAARK---RNETTMIDRLGGEIIDAANN--RGVAVRKREETHKVAEANR 149 (156) Q Consensus 79 r~gG~~yqvP~~i~~~r~~~lAirWii~~a~~---r~~~~~~~~La~Eii~A~~~--~g~aikkK~elhk~A~aNR 149 (156) ++||++||||++++|.||+++|||||+++|++ |++++|+++||+||++|++| +|.||+||+|+||+|+||| T Consensus 143 r~GG~~yqvPV~vsp~Rr~~lAirwI~~~ar~~~~r~~ks~~e~LA~EIi~Aa~~~~ks~AikKKeE~hK~AeaNR 218 (218) T 1iqv_A 143 MFGGIRYHVAVDISPLRRLDVALRNIALGASAKCYRTKMSFAEALAEEIILAANKDPKSYAYSKKLEIERIAESSR 218 (218) T ss_dssp EETTEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHCC T ss_pred ECCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHCC T ss_conf 4398888617221688999999999999999864678888999999999999758788655650788999898568 No 10 >1yxb_A PRA-PH, phosphoribosyl-ATP pyrophosphatase; structural genomics, PSI, protein structure initiative; 2.60A {Streptomyces coelicolor} SCOP: a.204.1.4 Probab=13.96 E-value=60 Score=12.91 Aligned_cols=39 Identities=13% Similarity=0.074 Sum_probs=28.4 Q ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH Q ss_conf 999766959999999999998667424886389999999 Q gi|254780265|r 28 NAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQAL 66 (156) Q Consensus 28 N~lMk~GKK~~A~kIv~~al~~I~~~~~~npi~il~~Ai 66 (156) +.|..+|....+.|+...|.+.+-.-.+.|+-.+..++- T Consensus 28 ~~Ll~~G~~~i~kKvgEEa~E~i~Aa~~~~k~~vi~EaA 66 (98) T 1yxb_A 28 AELVDKGVHAIGKKVVEEAAEVWMAAEYEGKDAAAEEIS 66 (98) T ss_dssp CCHHHHCHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH T ss_conf 999886489999999989999999998368787999999 Done!