RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780265|ref|YP_003064678.1| 30S ribosomal protein S7
[Candidatus Liberibacter asiaticus str. psy62]
(156 letters)
>gnl|CDD|143943 pfam00177, Ribosomal_S7, Ribosomal protein S7p/S5e. This family
contains ribosomal protein S7 from prokaryotes and S5
from eukaryotes.
Length = 149
Score = 208 bits (531), Expect = 7e-55
Identities = 82/149 (55%), Positives = 114/149 (76%)
Query: 1 MSRRRRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVA 60
M RR RA REVLPDPK++ +V K +N +M GKKS+A IVY AF+++E+K K+P+
Sbjct: 1 MPRRGRAKKREVLPDPKYNSRLVEKLINKLMKDGKKSLAEKIVYKAFEIIEEKTGKNPLE 60
Query: 61 LFRQALINVTPQFEVRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRL 120
+ QA+ NV P+ EV++RRVGGA Y VP E++ +R ALAIRW++ AARKR+ +M ++L
Sbjct: 61 VLVQAIENVKPRVEVKSRRVGGATYQVPVEVSPERRVALAIRWILKAARKRSGKSMAEKL 120
Query: 121 GGEIIDAANNRGVAVRKREETHKVAEANR 149
E+IDAANN+G A++K+EETHK+AEANR
Sbjct: 121 ANELIDAANNKGSAIKKKEETHKMAEANR 149
>gnl|CDD|176994 CHL00053, rps7, ribosomal protein S7.
Length = 155
Score = 190 bits (486), Expect = 1e-49
Identities = 79/155 (50%), Positives = 109/155 (70%)
Query: 1 MSRRRRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVA 60
MSRR A R PDP + + +V +N I+ GKKS+A IVY A +++K +K+P++
Sbjct: 1 MSRRGTAKKRTAKPDPIYRNRLVNMLVNRILKSGKKSLAYRIVYRALKKIQQKTEKNPLS 60
Query: 61 LFRQALINVTPQFEVRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRL 120
+ RQA+ NVTP EV+ RRVGG+ Y VP EI S R +ALAIRWL+ A+RKR+ M +L
Sbjct: 61 VLRQAIRNVTPDVEVKARRVGGSTYQVPIEIGSTRGKALAIRWLLKASRKRSGRNMAFKL 120
Query: 121 GGEIIDAANNRGVAVRKREETHKVAEANRAFSHYR 155
E++DAA G A+RK+EETH++AEANRAF+H+R
Sbjct: 121 SSELVDAAKGSGNAIRKKEETHRMAEANRAFAHFR 155
>gnl|CDD|30398 COG0049, RpsG, Ribosomal protein S7 [Translation, ribosomal
structure and biogenesis].
Length = 148
Score = 184 bits (470), Expect = 6e-48
Identities = 82/148 (55%), Positives = 112/148 (75%)
Query: 2 SRRRRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVAL 61
RR A REVLPDPK++ +V + +N IM GKKS+A IVYGAFD++EKK ++P+ +
Sbjct: 1 PRRHTAGKREVLPDPKYNSVIVERLINKIMRDGKKSLAEKIVYGAFDIIEKKTGQNPLQV 60
Query: 62 FRQALINVTPQFEVRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRLG 121
F +A+ NV P+ EV++RRVGGA Y VP E+ +R ALA+RW++ ARKRNE TM +RL
Sbjct: 61 FEKAIENVKPREEVKSRRVGGATYQVPVEVRPRRRVALALRWIVEGARKRNEKTMAERLA 120
Query: 122 GEIIDAANNRGVAVRKREETHKVAEANR 149
E+IDAANN G A++K+E+TH++AEANR
Sbjct: 121 NELIDAANNTGAAIKKKEDTHRMAEANR 148
>gnl|CDD|38501 KOG3291, KOG3291, KOG3291, Ribosomal protein S7 [Translation,
ribosomal structure and biogenesis].
Length = 208
Score = 119 bits (300), Expect = 3e-28
Identities = 51/152 (33%), Positives = 82/152 (53%), Gaps = 3/152 (1%)
Query: 1 MSRRRRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVA 60
S R A R + ++ K MN IM GKK +A IV A +++++ +++P+
Sbjct: 57 HSAGRYAKKRFRKAQCPIVERLINKLMNHIMKNGKKLLARRIVKHALEIIKRLTERNPIQ 116
Query: 61 LFRQALINVTPQFEVRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARK---RNETTMI 117
+ QA+ N P +V G Y VP ++ R LAI+W++ AR+ RN T+
Sbjct: 117 VLVQAIENCGPLEDVTRIGRAGTTYQVPVPVSPLRRVNLAIKWILTGARERSFRNIKTLA 176
Query: 118 DRLGGEIIDAANNRGVAVRKREETHKVAEANR 149
+ L E+I AA G A++K++E H++AEANR
Sbjct: 177 ECLADELIAAAKGSGNAIKKKDELHRMAEANR 208
>gnl|CDD|32611 COG2718, COG2718, Uncharacterized conserved protein [Function
unknown].
Length = 423
Score = 28.4 bits (63), Expect = 0.96
Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 2/73 (2%)
Query: 74 EVRTRRVGGAAYSVPGEITSKRSQ--ALAIRWLIMAARKRNETTMIDRLGGEIIDAANNR 131
E +T R G VP I+ R+ +LA R + ++R + L +
Sbjct: 146 EFKTHRAGYTKSGVPANISVVRTLQNSLARRTAMTRPKRRELDALAGELADIEVSEPAQL 205
Query: 132 GVAVRKREETHKV 144
R R E ++
Sbjct: 206 MEEERLRPEIARL 218
>gnl|CDD|113071 pfam04285, DUF444, Protein of unknown function (DUF444). Bacterial
protein of unknown function. One family member is
predicted to contain a von Willebrand factor (vWF) type
A domain (Smart:VWA).
Length = 421
Score = 27.4 bits (61), Expect = 1.9
Identities = 13/72 (18%), Positives = 20/72 (27%), Gaps = 2/72 (2%)
Query: 74 EVRTRRVGGAAYSVPGEITSKRSQ--ALAIRWLIMAARKRNETTMIDRLGGEIIDAANNR 131
E +T R G VP I R+ A+ R + ++ L +
Sbjct: 146 EFKTERAGIQKSGVPANINKVRTLRSAIKRRIALGRPKRAELDADAGELARIARWEPIDL 205
Query: 132 GVAVRKREETHK 143
R E
Sbjct: 206 MEEDVLRTEIAI 217
>gnl|CDD|48393 cd02148, Nitroreductase_5, Nitroreductase-like family 5. A
subfamily of the nitroreductase family containing
uncharacterized proteins that are similar to
nitroreductase. Nitroreductase catalyzes the reduction
of nitroaromatic compounds such as nitrotoluenes,
nitrofurans and nitroimidazoles. This process requires
NAD(P)H as electron donor in an obligatory two-electron
transfer and uses FMN as cofactor. The enzyme is
typically a homodimer. Members of this family are also
called NADH dehydrogenase, oxygen-insensitive NAD(P)H
nitrogenase or dihydropteridine reductase..
Length = 185
Score = 27.1 bits (60), Expect = 1.9
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 62 FRQALINVTPQFEVRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAAR 109
F + L + P + R+ G A + E T+ R+ +L + I+AAR
Sbjct: 85 FHEQLPRLFPHRDARSWFFGSPALA---EETAFRNSSLQGGYFILAAR 129
>gnl|CDD|143629 cd07891, CYTH-like_CthTTM-like_1, CYTH-like Clostridium
thermocellum TTM-like subgroup 1. This subgroup
contains the triphosphate tunnel metalloenzyme (TTM)
from Clostridium thermocellum (CthTTM) and similar
proteins. These are found primarily in bacteria. CthTTM
is a metal dependent tripolyphosphatase, nucleoside
triphosphatase, and nucleoside tetraphosphatase. It
hydrolyzes the beta-gamma phosphoanhydride linkage of
triphosphate-containing substrates including
tripolyphosphate, nucleoside triphosphates and
nucleoside tetraphosphates. These substrates are
hydrolyzed, releasing Pi. Mg++ or Mn++ are required for
the enzyme's activity. CthTTM appears to have no
adenylate cyclase activity. This subgroup consists
chiefly of bacterial sequences. These enzymes are
members of the CYTH-like (also known as triphosphate
tunnel metalloenzyme (TTM)-like) superfamily, which
have a unique active site located within an
eight-stranded beta barrel.
Length = 148
Score = 26.3 bits (59), Expect = 3.9
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 53 KEKKDPVALFRQALINVTPQFEVRTRRVGGAAY 85
+ RQ ++ P+ VR R G AY
Sbjct: 15 RALAAKGVRIRQGYLSTDPERTVRVRIAGDRAY 47
>gnl|CDD|35358 KOG0136, KOG0136, KOG0136, Acyl-CoA oxidase [Lipid transport and
metabolism].
Length = 670
Score = 26.0 bits (57), Expect = 4.2
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 3 RRRRAVVREVLPDPKFSDFVVAKFM 27
+RRR + V DP+ D FM
Sbjct: 39 KRRREIEDLVASDPELQDKKPLPFM 63
>gnl|CDD|173839 cd01150, AXO, Peroxisomal acyl-CoA oxidase. Peroxisomal acyl-CoA
oxidases (AXO) catalyze the first set in the
peroxisomal fatty acid beta-oxidation, the alpha,beta
dehydrogenation of the corresponding trans-enoyl-CoA by
FAD, which becomes reduced. In a second oxidative
half-reaction, the reduced FAD is reoxidized by
molecular oxygen. AXO is generally a homodimer, but it
has been reported to form a different type of oligomer
in yeast. There are several subtypes of AXO's, based on
substrate specificity. Palmitoyl-CoA oxidase acts on
straight-chain fatty acids and prostanoids; whereas,
the closely related Trihydroxycoprostanoly-CoA oxidase
has the greatest activity for 2-methyl branched side
chains of bile precursors. Pristanoyl-CoA oxidase, acts
on 2-methyl branched fatty acids. AXO has an
additional domain, C-terminal to the region with
similarity to acyl-CoA dehydrogenases, which is
included in this alignment.
Length = 610
Score = 25.8 bits (57), Expect = 6.0
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 3 RRRRAVVREVLPDPKFSDFVVAKFM 27
RR+R V RE+ DP F + +K +
Sbjct: 29 RRKREVERELESDPLFQRELPSKHL 53
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.322 0.134 0.381
Gapped
Lambda K H
0.267 0.0781 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,836,613
Number of extensions: 87955
Number of successful extensions: 192
Number of sequences better than 10.0: 1
Number of HSP's gapped: 191
Number of HSP's successfully gapped: 18
Length of query: 156
Length of database: 6,263,737
Length adjustment: 86
Effective length of query: 70
Effective length of database: 4,405,363
Effective search space: 308375410
Effective search space used: 308375410
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.1 bits)