RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780265|ref|YP_003064678.1| 30S ribosomal protein S7
[Candidatus Liberibacter asiaticus str. psy62]
(156 letters)
>gnl|CDD|180003 PRK05302, PRK05302, 30S ribosomal protein S7; Validated.
Length = 156
Score = 261 bits (669), Expect = 7e-71
Identities = 97/156 (62%), Positives = 122/156 (78%)
Query: 1 MSRRRRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVA 60
M RRRRA REVLPDPK+ +V KF+N +M GKKSVA IVYGA D++E+K KDP+
Sbjct: 1 MPRRRRAPKREVLPDPKYGSVLVTKFINKLMLDGKKSVAEKIVYGALDIIEEKTGKDPLE 60
Query: 61 LFRQALINVTPQFEVRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRL 120
+F +AL NV P EV++RRVGGA Y VP E+ +R QALA+RWL+ AARKR E TM +RL
Sbjct: 61 VFEKALENVKPVVEVKSRRVGGATYQVPVEVRPERRQALAMRWLVEAARKRGEKTMAERL 120
Query: 121 GGEIIDAANNRGVAVRKREETHKVAEANRAFSHYRW 156
E++DAANNRG AV+KRE+TH++AEAN+AF+HYRW
Sbjct: 121 ANELLDAANNRGAAVKKREDTHRMAEANKAFAHYRW 156
>gnl|CDD|162164 TIGR01029, rpsG_bact, ribosomal protein S7, bacterial/organelle.
This model describes the bacterial and organellar branch
of the ribosomal protein S7 family (includes prokaroytic
S7 and eukaryotic S5). The eukaryotic and archaeal
branch is described by model TIGR01028.
Length = 154
Score = 210 bits (537), Expect = 1e-55
Identities = 86/154 (55%), Positives = 114/154 (74%)
Query: 3 RRRRAVVREVLPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVALF 62
R+R+A R++ PDP + ++ KF+N +M GKKS+A SIVY AF+ + KK +DP+ +F
Sbjct: 1 RKRKAEKRKIPPDPVYGSVLLNKFINRVMKDGKKSLAESIVYKAFERIAKKTGEDPLEVF 60
Query: 63 RQALINVTPQFEVRTRRVGGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRLGG 122
QAL NV P EV++RRVGGA Y VP E+ R ALAIRWLI AARKR +M +RL
Sbjct: 61 EQALENVKPLVEVKSRRVGGATYQVPVEVRPSRRYALAIRWLIEAARKRGGKSMAERLAN 120
Query: 123 EIIDAANNRGVAVRKREETHKVAEANRAFSHYRW 156
EI+DAANN G A++KRE+TH++AEAN+AF+HYRW
Sbjct: 121 EILDAANNTGAAIKKREDTHRMAEANKAFAHYRW 154
>gnl|CDD|179717 PRK04027, PRK04027, 30S ribosomal protein S7P; Reviewed.
Length = 195
Score = 77.6 bits (192), Expect = 1e-15
Identities = 46/137 (33%), Positives = 81/137 (59%), Gaps = 9/137 (6%)
Query: 22 VVAKFMNAIM----YGGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALINVTPQFEVRT 77
+V + +N +M GKK A +IV AF+++EK+ K++P+ + A+ N P+ E
Sbjct: 59 IVERLINKLMRTERNTGKKQKAYNIVKEAFEIIEKRTKQNPIQVLVDAIENAAPREETTR 118
Query: 78 RRVGGAAYSVPGEITSKRSQALAIRWLIMAARK---RNETTMIDRLGGEIIDAANN--RG 132
+ GG +Y +++ +R LA+R++ AR+ +N+ ++ + L EII AANN +
Sbjct: 119 IKYGGISYPKAVDVSPQRRVDLALRFIAEGARQASFKNKKSIEEALAEEIIAAANNDPKS 178
Query: 133 VAVRKREETHKVAEANR 149
AVRK+EE +VA++ R
Sbjct: 179 YAVRKKEEIERVAKSAR 195
>gnl|CDD|130100 TIGR01028, S7_S5_E_A, ribosomal protein
S7(archaeal)/S5(eukaryotic). This model describes the
members from the eukaryotic cytosol and the Archaea of
the family that includes ribosomal protein S7 of
bacteria and S5 of eukaryotes. A separate model
describes bacterial and organellar S7.
Length = 186
Score = 74.0 bits (182), Expect = 1e-14
Identities = 42/138 (30%), Positives = 74/138 (53%), Gaps = 9/138 (6%)
Query: 21 FVVAKFMNAIMY----GGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALINVTPQFEVR 76
+V + +N +M GKK A IV AF+++EK+ ++P+ + A+ N P+ +
Sbjct: 49 PIVERLINKVMRSGRNNGKKLKAYRIVKEAFEIIEKRTGENPIQVLVDAIENAGPREDTT 108
Query: 77 TRRVGGAAYSVPGEITSKRSQALAIRWLIMAARK---RNETTMIDRLGGEIIDAANN--R 131
GG Y +I+ R A+R + + AR+ RN+ ++ + L EII AAN +
Sbjct: 109 RIGYGGIVYRQAVDISPLRRVDQALRNIALGAREAAFRNKKSIAECLAEEIILAANGDSK 168
Query: 132 GVAVRKREETHKVAEANR 149
A++K+EE +VA++ R
Sbjct: 169 SYAIKKKEELERVAKSAR 186
>gnl|CDD|185439 PTZ00091, PTZ00091, 40S ribosomal protein S5; Provisional.
Length = 193
Score = 54.4 bits (131), Expect = 1e-08
Identities = 43/138 (31%), Positives = 73/138 (52%), Gaps = 11/138 (7%)
Query: 22 VVAKFMNAIMY----GGKKSVAVSIVYGAFDLVEKKEKKDPVALFRQALINVTPQFEVRT 77
+V + +N++M+ GKK +AV IV AF+++ K+P+ + A+ N P+ E T
Sbjct: 57 IVERLVNSLMFHGRNNGKKLLAVRIVKHAFEIIHLLTDKNPLQVLVDAVQNGGPR-EDST 115
Query: 78 R-RVGGAAYSVPGEITSKRSQALAIRWLIMAARK---RNETTMIDRLGGEIIDAANN--R 131
R GG +++ R AI + AR+ RN T+ + L EII+A+
Sbjct: 116 RVGSGGVVRRQAVDVSPLRRVNQAIYLICKGAREAAFRNIKTIAECLADEIINASKESSN 175
Query: 132 GVAVRKREETHKVAEANR 149
A++K++E +VA+ANR
Sbjct: 176 SYAIKKKDEVERVAKANR 193
>gnl|CDD|185519 PTZ00219, PTZ00219, Sec61 alpha subunit; Provisional.
Length = 474
Score = 28.0 bits (63), Expect = 1.1
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 22 VVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDPVALF 62
++A F+ AI G +AV+I+Y ++ KEK+ LF
Sbjct: 435 ILADFLGAIGSGTGILLAVTIIYQYYETF-AKEKEQYGFLF 474
>gnl|CDD|177506 PHA03003, PHA03003, palmytilated EEV membrane glycoprotein;
Provisional.
Length = 369
Score = 27.3 bits (61), Expect = 1.9
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 94 KRSQALAIRWLIMAARKRNETTMIDRLGGEIIDAANNRGVAVR 136
K+S L + L+ R+ ++TT + +I AA NRGV VR
Sbjct: 229 KKSIDLELLSLVPVIREDDKTTYWPDIYNALIRAAINRGVKVR 271
>gnl|CDD|166261 PLN02620, PLN02620, indole-3-acetic acid-amido synthetase.
Length = 612
Score = 27.2 bits (60), Expect = 1.9
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 5 RRAVVREVLPDPKFSDFVVAK 25
R AV++ + PDPK +DFV A+
Sbjct: 269 REAVMKILKPDPKLADFVEAE 289
>gnl|CDD|164925 PHA02524, 43A, DNA polymerase subunit A; Provisional.
Length = 498
Score = 26.5 bits (58), Expect = 2.8
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Query: 13 LPDPKFSDFVVAKFMNAIMYGGKKSVAVSIVYGAFDLVEKKEKKDP 58
P+PK++ + + + ++ GKK+ Y FDLV+ DP
Sbjct: 120 FPEPKYAKYEIDMISHVRLHNGKKT------YYIFDLVKDVGHWDP 159
>gnl|CDD|177834 PLN02178, PLN02178, cinnamyl-alcohol dehydrogenase.
Length = 375
Score = 25.8 bits (56), Expect = 5.0
Identities = 13/46 (28%), Positives = 21/46 (45%)
Query: 78 RRVGGAAYSVPGEITSKRSQALAIRWLIMAARKRNETTMIDRLGGE 123
+R+G G I K +A +R +++ E IDRLG +
Sbjct: 180 KRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRLGAD 225
>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease
protein; Provisional.
Length = 648
Score = 25.5 bits (56), Expect = 7.3
Identities = 18/60 (30%), Positives = 22/60 (36%), Gaps = 11/60 (18%)
Query: 76 RTRRVGGAAYSVP------GEITSKRSQALAIRWLIMAARK-RNETTMIDRLGGEIIDAA 128
V G V + S +AL + W MAA K R TM+ G II A
Sbjct: 229 EKVNVAGGTEPVVNTASGWRQFVSGFREALTMAWRAMAANKMRTLLTML----GIIIGIA 284
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.322 0.134 0.381
Gapped
Lambda K H
0.267 0.0734 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 2,633,685
Number of extensions: 161875
Number of successful extensions: 326
Number of sequences better than 10.0: 1
Number of HSP's gapped: 320
Number of HSP's successfully gapped: 23
Length of query: 156
Length of database: 5,994,473
Length adjustment: 85
Effective length of query: 71
Effective length of database: 4,157,793
Effective search space: 295203303
Effective search space used: 295203303
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.2 bits)